Department of Microbiology and Plant Biology and Oklahoma Biological Survey, University of Oklahoma, 770 Van Vleet Oval, Norman, OK, 73019, USA.
Department of Biology, University of Central Oklahoma, Howell Hall, Room 220, Edmond, OK, 73034, USA.
BMC Ecol Evol. 2021 Mar 10;21(1):40. doi: 10.1186/s12862-020-01721-5.
Cherleria (Caryophyllaceae) is a circumboreal genus that also occurs in the high mountains of the northern hemisphere. In this study, we focus on a clade that diversified in the European High Mountains, which was identified using nuclear ribosomal (nrDNA) sequence data in a previous study. With the nrDNA data, all but one species was monophyletic, with little sequence variation within most species. Here, we use genotyping by sequencing (GBS) data to determine whether the nrDNA data showed the full picture of the evolution in the genomes of these species.
The overall relationships found with the GBS data were congruent with those from the nrDNA study. Most of the species were still monophyletic and many of the same subclades were recovered, including a clade of three narrow endemic species from Greece and a clade of largely calcifuge species. The GBS data provided additional resolution within the two species with the best sampling, C. langii and C. laricifolia, with structure that was congruent with geography. In addition, the GBS data showed significant hybridization between several species, including species whose ranges did not currently overlap.
The hybridization led us to hypothesize that lineages came in contact on the Balkan Peninsula after they diverged, even when those lineages are no longer present on the Balkan Peninsula. Hybridization may also have helped lineages expand their niches to colonize new substrates and different areas. Not only do genome-wide data provide increased phylogenetic resolution of difficult nodes, they also give evidence for a more complex evolutionary history than what can be depicted by a simple, branching phylogeny.
Cherleria(石竹科)是一个分布于环北极地区的属,也分布于北半球的高山地区。在本研究中,我们关注的是一个在前一项研究中利用核核糖体(nrDNA)序列数据鉴定的在欧洲高山地区多样化的分支。利用 nrDNA 数据,除了一个物种外,所有物种都是单系的,大多数物种的序列变异很小。在这里,我们使用测序基因型(GBS)数据来确定 nrDNA 数据是否显示了这些物种基因组进化的全貌。
利用 GBS 数据得出的总体关系与 nrDNA 研究一致。大多数物种仍然是单系的,并且恢复了许多相同的亚分支,包括来自希腊的三个狭窄特有物种的分支和一个主要是钙生的物种的分支。GBS 数据为具有最佳采样的两个物种 C. langii 和 C. laricifolia 提供了更多的分辨率,其结构与地理分布一致。此外,GBS 数据显示了几个物种之间的显著杂交,包括那些目前没有重叠分布范围的物种。
杂交使我们假设,即使在这些谱系不再存在于巴尔干半岛上之后,它们在分化后仍在巴尔干半岛上接触。杂交也可能帮助谱系扩展它们的生态位,以殖民新的基质和不同的地区。全基因组数据不仅提供了对困难节点的更高分辨率的系统发育,而且还提供了比简单的分支系统发育更复杂的进化历史的证据。