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基于肿瘤微环境相关基因的弥漫性大B细胞淋巴瘤预后基因特征的鉴定与验证

Identification and Validation of a Prognostic Gene Signature for Diffuse Large B-Cell Lymphoma Based on Tumor Microenvironment-Related Genes.

作者信息

Pan Tao, He Yizi, Chen Huan, Pei Junfei, Li Yajun, Zeng Ruolan, Xia Jiliang, Zuo Yilang, Qin Liping, Chen Siwei, Xiao Ling, Zhou Hui

机构信息

Department of Lymphoma & Hematology, Hunan Cancer Hospital, The Affiliated Cancer Hospital of Xiangya School of Medicine, Central South University, Changsha, China.

The Third Xiangya Hospital, Central South University, Changsha, China.

出版信息

Front Oncol. 2021 Feb 22;11:614211. doi: 10.3389/fonc.2021.614211. eCollection 2021.

DOI:10.3389/fonc.2021.614211
PMID:33692952
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7938316/
Abstract

Diffuse large B-cell lymphoma (DLBCL) is an extremely heterogeneous tumor entity, which makes prognostic prediction challenging. The tumor microenvironment (TME) has a crucial role in fostering and restraining tumor development. Consequently, we performed a systematic investigation of the TME and genetic factors associated with DLBCL to identify prognostic biomarkers for DLBCL. Data for a total of 1,084 DLBCL patients from the Gene Expression Omnibus database were included in this study, and patients were divided into a training group, an internal validation group, and two external validation groups. We calculated the abundance of immune-stromal components of DLBCL and found that they were related to tumor prognosis and progression. Then, differentially expressed genes were obtained based on immune and stromal scores, and prognostic TME-related genes were further identified using a protein-protein interaction network and univariate Cox regression analysis. These genes were analyzed by the least absolute shrinkage and selection operator Cox regression model to establish a seven-gene signature, comprising , , , , , , and . The signature was shown to have critical prognostic value in the training and validation sets and was also confirmed to be an independent prognostic factor. Subgroup analysis also indicated the robust prognostic ability of the signature. A nomogram integrating the seven-gene signature and components of the International Prognostic Index was shown to have value for prognostic prediction. Gene set enrichment analysis between risk groups demonstrated that immune-related pathways were enriched in the low-risk group. In conclusion, a novel and reliable TME relevant gene signature was proposed and shown to be capable of predicting the survival of DLBCL patients at high risk of poor survival.

摘要

弥漫性大B细胞淋巴瘤(DLBCL)是一种极其异质性的肿瘤实体,这使得预后预测具有挑战性。肿瘤微环境(TME)在促进和抑制肿瘤发展中起着关键作用。因此,我们对与DLBCL相关的TME和遗传因素进行了系统研究,以确定DLBCL的预后生物标志物。本研究纳入了来自基因表达综合数据库的总共1084例DLBCL患者的数据,并将患者分为训练组、内部验证组和两个外部验证组。我们计算了DLBCL免疫基质成分的丰度,发现它们与肿瘤预后和进展相关。然后,基于免疫和基质评分获得差异表达基因,并使用蛋白质-蛋白质相互作用网络和单变量Cox回归分析进一步鉴定预后TME相关基因。通过最小绝对收缩和选择算子Cox回归模型对这些基因进行分析,以建立一个七基因特征,包括 、 、 、 、 、 和 。该特征在训练集和验证集中显示出关键的预后价值,并且也被证实是一个独立的预后因素。亚组分析也表明了该特征强大的预后能力。整合七基因特征和国际预后指数成分的列线图显示出对预后预测的价值。风险组之间的基因集富集分析表明,免疫相关途径在低风险组中富集。总之,我们提出了一种新颖且可靠的与TME相关的基因特征,并表明其能够预测生存预后不良风险高的DLBCL患者的生存情况。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2b91/7938316/5839d392cf15/fonc-11-614211-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2b91/7938316/c32e5bb41c59/fonc-11-614211-g001.jpg
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https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2b91/7938316/00a939b311e3/fonc-11-614211-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2b91/7938316/07a1e4b67693/fonc-11-614211-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2b91/7938316/3a4f0a4d4580/fonc-11-614211-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2b91/7938316/89413501628b/fonc-11-614211-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2b91/7938316/5839d392cf15/fonc-11-614211-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2b91/7938316/c32e5bb41c59/fonc-11-614211-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2b91/7938316/ebc32ad3d188/fonc-11-614211-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2b91/7938316/00a939b311e3/fonc-11-614211-g003.jpg
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https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2b91/7938316/3a4f0a4d4580/fonc-11-614211-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2b91/7938316/89413501628b/fonc-11-614211-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2b91/7938316/5839d392cf15/fonc-11-614211-g007.jpg

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