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通过Tox21高通量筛选分析揭示的药物与环境化学物质的生物活性特征

Bioactivity Signatures of Drugs vs. Environmental Chemicals Revealed by Tox21 High-Throughput Screening Assays.

作者信息

Ngan Deborah K, Ye Lin, Wu Leihong, Xia Menghang, Rossoshek Anna, Simeonov Anton, Huang Ruili

机构信息

Division of Pre-clinical Innovation, National Center for Advancing Translational Sciences (NCATS), National Institutes of Health (NIH), Rockville, MD, United States.

National Center for Toxicological Research, US Food and Drug Administration, Jefferson, AR, United States.

出版信息

Front Big Data. 2019 Dec 13;2:50. doi: 10.3389/fdata.2019.00050. eCollection 2019.

Abstract

Humans are exposed to tens of thousands of chemicals over the course of a lifetime, yet there remains inadequate data on the potential harmful effects of these substances on human health. Using quantitative high-throughput screening (qHTS), we can test these compounds for potential toxicity in a more efficient and cost-effective way compared to traditional animal studies. Tox21 has developed a library of ~10,000 chemicals (Tox21 10K) comprising one-third approved and investigational drugs and two-thirds environmental chemicals. In this study, the Tox21 10K was screened in a qHTS format against a panel of 70 cell-based assays with 213 readouts covering a broad range of biological pathways. Activity profiles were compared with chemical structure to assess their ability to differentiate drugs from environmental chemicals, and structure was found to be a better predictor of which chemicals are likely to be drugs. Drugs and environmental chemicals were further analyzed for diversity in structure and biological response space and showed distinguishable, but not distinct, responses in the Tox21 assays. Inclusion of other targets and pathways to further diversify the biological response space covered by these assays is likely required to better evaluate the safety profile of drugs and environmental chemicals to prioritize for in-depth toxicological studies.

摘要

人类在一生中会接触到成千上万种化学物质,但关于这些物质对人类健康潜在有害影响的数据仍然不足。与传统的动物研究相比,使用定量高通量筛选(qHTS),我们可以以更高效、更具成本效益的方式测试这些化合物的潜在毒性。Tox21已经开发了一个包含约10000种化学物质的文库(Tox21 10K),其中三分之一是已批准和正在研究的药物,三分之二是环境化学物质。在这项研究中,Tox21 10K以qHTS的形式针对一组70种基于细胞的检测方法进行了筛选,这些检测方法有213种读数,涵盖了广泛的生物途径。将活性谱与化学结构进行比较,以评估它们区分药物和环境化学物质的能力,发现结构是预测哪些化学物质可能是药物的更好指标。对药物和环境化学物质在结构和生物反应空间的多样性进行了进一步分析,结果表明它们在Tox21检测中表现出可区分但不明显的反应。可能需要纳入其他靶点和途径来进一步扩大这些检测所涵盖的生物反应空间多样性,以便更好地评估药物和环境化学物质的安全性,从而确定深入毒理学研究的优先级。

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