• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

宏基因组测序揭示了纸币作为微生物基因库的潜力。

Metagenomic sequencing revealed the potential of banknotes as a repository of microbial genes.

作者信息

Lin Jun, Jiang Wenqian, Chen Lin, Zhang Huilian, Shi Yang, Liu Xin, Cai Weiwen

机构信息

Institute of Applied Genomics, Fuzhou University, No.2 Xueyuan Road, Fuzhou, 350108, China.

School of Basic Medical Sciences, Fujian Medical University, No.1 Xuefubei Road, Fuzhou, 350122, China.

出版信息

BMC Genomics. 2021 Mar 11;22(1):173. doi: 10.1186/s12864-021-07424-5.

DOI:10.1186/s12864-021-07424-5
PMID:33706718
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7953773/
Abstract

BACKGROUND

Genetic resources are important natural assets. Discovery of new enzyme gene sequences has been an ongoing effort in biotechnology industry. In the genomic age, genomes of microorganisms from various environments have been deciphered. Increasingly, it has become more and more difficult to find novel enzyme genes. In this work, we attempted to use the easily accessible banknotes to search for novel microbial gene sequences.

RESULTS

We used high-throughput genomic sequencing technology to comprehensively characterize the diversity of microorganisms on the US dollars and Chinese Renminbis (RMBs). In addition to finding a vast diversity of microbes, we found a significant number of novel gene sequences, including an unreported superoxide dismutase (SOD) gene, whose catalytic activity was further verified by experiments.

CONCLUSIONS

We demonstrated that banknotes could be a good and convenient genetic resource for finding economically valuable biologicals.

摘要

背景

遗传资源是重要的自然资产。发现新的酶基因序列一直是生物技术产业不断努力的方向。在基因组时代,来自各种环境的微生物基因组已被破译。越来越难以找到新的酶基因。在这项工作中,我们尝试利用易于获取的纸币来寻找新的微生物基因序列。

结果

我们使用高通量基因组测序技术全面表征了美元和人民币上微生物的多样性。除了发现种类繁多的微生物外,我们还发现了大量新的基因序列,包括一个未报道的超氧化物歧化酶(SOD)基因,其催化活性通过实验得到了进一步验证。

结论

我们证明了纸币可能是寻找具有经济价值生物制品的良好且便捷的遗传资源。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c1a4/7953773/8aba0e0be698/12864_2021_7424_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c1a4/7953773/1f1f93030ac9/12864_2021_7424_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c1a4/7953773/ecc1d6a824fa/12864_2021_7424_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c1a4/7953773/3e0546d90428/12864_2021_7424_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c1a4/7953773/8d979e95939f/12864_2021_7424_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c1a4/7953773/8aba0e0be698/12864_2021_7424_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c1a4/7953773/1f1f93030ac9/12864_2021_7424_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c1a4/7953773/ecc1d6a824fa/12864_2021_7424_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c1a4/7953773/3e0546d90428/12864_2021_7424_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c1a4/7953773/8d979e95939f/12864_2021_7424_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c1a4/7953773/8aba0e0be698/12864_2021_7424_Fig5_HTML.jpg

相似文献

1
Metagenomic sequencing revealed the potential of banknotes as a repository of microbial genes.宏基因组测序揭示了纸币作为微生物基因库的潜力。
BMC Genomics. 2021 Mar 11;22(1):173. doi: 10.1186/s12864-021-07424-5.
2
Contemporary molecular tools in microbial ecology and their application to advancing biotechnology.当代微生物生态学中的分子工具及其在推进生物技术中的应用。
Biotechnol Adv. 2015 Dec;33(8):1755-73. doi: 10.1016/j.biotechadv.2015.09.005. Epub 2015 Sep 25.
3
Metagenomic assembly through the lens of validation: recent advances in assessing and improving the quality of genomes assembled from metagenomes.通过验证的视角看宏基因组组装:评估和提高宏基因组组装基因组质量的最新进展。
Brief Bioinform. 2019 Jul 19;20(4):1140-1150. doi: 10.1093/bib/bbx098.
4
Metagenome Analysis: a Powerful Tool for Enzyme Bioprospecting.宏基因组分析:酶生物勘探的强大工具。
Appl Biochem Biotechnol. 2017 Oct;183(2):636-651. doi: 10.1007/s12010-017-2568-3. Epub 2017 Aug 16.
5
[Metagenomics as a Tool for the Investigation of Uncultured Microorganisms].[宏基因组学作为研究未培养微生物的工具]
Genetika. 2015 May;51(5):519-28.
6
Complementary Metagenomic Approaches Improve Reconstruction of Microbial Diversity in a Forest Soil.互补宏基因组学方法改进森林土壤中微生物多样性的重建
mSystems. 2020 Mar 10;5(2):e00768-19. doi: 10.1128/mSystems.00768-19.
7
Captured metagenomics: large-scale targeting of genes based on 'sequence capture' reveals functional diversity in soils.捕获宏基因组学:基于“序列捕获”的基因大规模靶向揭示土壤中的功能多样性
DNA Res. 2015 Dec;22(6):451-60. doi: 10.1093/dnares/dsv026. Epub 2015 Oct 21.
8
Finding the needles in the metagenome haystack.在宏基因组的干草堆中找到针。
Microb Ecol. 2007 Apr;53(3):475-85. doi: 10.1007/s00248-006-9201-2. Epub 2007 Mar 8.
9
Intrinsic correlation of oligonucleotides: a novel genomic signature for metagenome analysis.寡核苷酸的内在相关性:一种用于宏基因组分析的新型基因组特征。
J Theor Biol. 2014 Jul 21;353:9-18. doi: 10.1016/j.jtbi.2014.02.039. Epub 2014 Mar 11.
10
[Application status of metagenomics in quality research of traditional Chinese medicinal materials].[宏基因组学在中药材质量研究中的应用现状]
Zhongguo Zhong Yao Za Zhi. 2022 Dec;47(23):6271-6277. doi: 10.19540/j.cnki.cjcmm.20220809.101.

本文引用的文献

1
Toward a Metagenomic Understanding on the Bacterial Composition and Resistome in Hong Kong Banknotes.迈向对香港纸币上细菌组成和耐药组的宏基因组学理解。
Front Microbiol. 2017 Apr 13;8:632. doi: 10.3389/fmicb.2017.00632. eCollection 2017.
2
New CRISPR-Cas systems from uncultivated microbes.来自未培养微生物的新型CRISPR-Cas系统。
Nature. 2017 Feb 9;542(7640):237-241. doi: 10.1038/nature21059. Epub 2016 Dec 22.
3
Urban park soil microbiomes are a rich reservoir of natural product biosynthetic diversity.城市公园土壤微生物群落是天然产物生物合成多样性的丰富宝库。
Proc Natl Acad Sci U S A. 2016 Dec 20;113(51):14811-14816. doi: 10.1073/pnas.1615581113. Epub 2016 Nov 28.
4
MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets.MEGA7:适用于更大数据集的分子进化遗传学分析版本7.0
Mol Biol Evol. 2016 Jul;33(7):1870-4. doi: 10.1093/molbev/msw054. Epub 2016 Mar 22.
5
eggNOG 4.5: a hierarchical orthology framework with improved functional annotations for eukaryotic, prokaryotic and viral sequences.蛋nog 4.5:一个具有改进功能注释的层次同源框架,适用于真核、原核和病毒序列。
Nucleic Acids Res. 2016 Jan 4;44(D1):D286-93. doi: 10.1093/nar/gkv1248. Epub 2015 Nov 17.
6
Screening currency notes for microbial pathogens and antibiotic resistance genes using a shotgun metagenomic approach.采用鸟枪法宏基因组学方法筛查货币纸币上的微生物病原体和抗生素抗性基因。
PLoS One. 2015 Jun 2;10(6):e0128711. doi: 10.1371/journal.pone.0128711. eCollection 2015.
7
Tackling soil diversity with the assembly of large, complex metagenomes.利用大型复杂宏基因组组装来解决土壤多样性问题。
Proc Natl Acad Sci U S A. 2014 Apr 1;111(13):4904-9. doi: 10.1073/pnas.1402564111. Epub 2014 Mar 14.
8
New extremophilic lipases and esterases from metagenomics.来自宏基因组学的新型嗜极脂肪酶和酯酶
Curr Protein Pept Sci. 2014;15(5):445-55. doi: 10.2174/1389203715666140228153801.
9
Expression and Purification of Recombinant Proteins Using the pET System.使用pET系统表达和纯化重组蛋白
Methods Mol Med. 1998;13:257-92. doi: 10.1385/0-89603-485-2:257.
10
Assembly algorithms for next-generation sequencing data.下一代测序数据的组装算法。
Genomics. 2010 Jun;95(6):315-27. doi: 10.1016/j.ygeno.2010.03.001. Epub 2010 Mar 6.