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新物种,新物种和新物种,从西澳大利亚该属的一个生物多样性热点地区分离得到。

sp. nov., sp. nov. and sp. nov., isolated from a biodiversity hotspot of the genus in Western Australia.

作者信息

Klepa Milena Serenato, Ferraz Helene Luisa Caroline, O'Hara Graham, Hungria Mariangela

机构信息

Embrapa Soja, C.P. 231, 86001-970, Londrina, Paraná, Brazil.

Coordenação de Aperfeiçoamento de Pessoal de Nível Superior, SBN, Quadra 2, Bloco L, Lote 06, Edifício Capes, 70.040-020, Brasília, Distrito Federal, Brazil.

出版信息

Int J Syst Evol Microbiol. 2019 Jun;71(3). doi: 10.1099/ijsem.0.004742. Epub 2021 Mar 12.

Abstract

Strains of the genus associated with agronomically important crops such as soybean () are increasingly studied; however, information about symbionts of wild species is scarce. Australia is a genetic centre of wild species and we performed a polyphasic analysis of three strains-CNPSo 4010, CNPSo 4016, and CNPSo 4019-trapped from Western Australian soils with , and , respectively. The phylogenetic tree of the 16S rRNA gene clustered all strains into the superclade; strains CNPSo 4010 and CNPSo 4016 had CCBAU 10071 as the closest species, whereas strain CNPSo 4019 was closer to LMG 18230. The multilocus sequence analysis (MLSA) with five housekeeping genes-, , , and -confirmed the same clusters as the 16S rRNA phylogeny, but indicated low similarity to described species, with nucleotide identities ranging from 93.6 to 97.6% of similarity. Considering the genomes of the three strains, the average nucleotide identity and digital DNA-DNA hybridization values were lower than 94.97 and 59.80 %, respectively, with the closest species. In the phylogeny, strains CNPSo 4010 and CNPSo 4019 grouped with and , respectively, while strain CNPSo 4016 was positioned separately from the all symbiotic species. Other genomic (BOX-PCR), phenotypic and symbiotic properties were evaluated and corroborated with the description of three new lineages of . We propose the names of sp. nov. for CNPSo 4010 (=WSM 4802=LMG 31645) isolated from , sp. nov. for CNPSo 4016 (=WSM 4801=LMG 31649) isolated from and sp. nov. for CNPSo 4019 (=WSM 4799=LMG 31650) isolated from .

摘要

与大豆等具有重要农艺价值的作物相关的[属名]菌株受到越来越多的研究;然而,关于野生[物种名]物种共生体的信息却很匮乏。澳大利亚是野生[物种名]物种的遗传中心,我们对分别从西澳大利亚土壤中用[植物名1]、[植物名2]和[植物名3]诱捕到的三株[菌株名]菌株——CNPSo 4010、CNPSo 4016和CNPSo 4019进行了多相分析。16S rRNA基因的系统发育树将所有菌株聚类到[超支名]超支中;菌株CNPSo 4010和CNPSo 4016与CCBAU 10071的亲缘关系最近,而菌株CNPSo 4019与[菌株名2]LMG 18230的亲缘关系更近。利用五个管家基因——[基因名1]、[基因名2]、[基因名3]、[基因名4]和[基因名5]进行的多位点序列分析(MLSA)证实了与16S rRNA系统发育相同的聚类,但表明与已描述物种的相似性较低,核苷酸同一性范围为93.6%至97.6%。考虑到这三株菌株的基因组,与亲缘关系最近的物种相比,平均核苷酸同一性和数字DNA-DNA杂交值分别低于9

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/20de/8375429/40e348a8d60e/ijsem-71-4742-g001.jpg

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