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确定灵长类动物分化过程中的基因复制事件。

Pinpointing the Gene Duplication Event During Primate Divergence.

作者信息

Heerschop Sacha, Fagrouch Zahra, Verschoor Ernst J, Zischler Hans

机构信息

Division of Anthropology, Institute of Organismic and Molecular Evolution, Faculty of Biology, Johannes Gutenberg University Mainz, Mainz, Germany.

Department of Virology, Biomedical Primate Research Centre, Rijswijk, Netherlands.

出版信息

Front Genet. 2021 Feb 24;12:593725. doi: 10.3389/fgene.2021.593725. eCollection 2021.

DOI:10.3389/fgene.2021.593725
PMID:33719332
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7943923/
Abstract

Studies on the function of in model systems and its evolution during vertebrate divergence shed light on the basic molecular mechanisms of hybrid sterility and its evolutionary consequences. However, information regarding -homolog, , whose origin is placed in the primate evolutionary tree, as well as information about the fast-evolving DNA-binding zinc finger array of strepsirrhine PRDM9 are scarce. Thus, we aimed to narrow down the date of the duplication event leading to the emergence of during primate evolution by comparing the phylogenetic tree reconstructions of representative primate samples of PRDM orthologs and paralogs. To confirm our paralogization pattern, database-deposited sequences were used to test the presence/absence patterns expected from the paralogization timing. In addition, we extended the existing phylogenetic tree of haplorrhine zinc fingers with their strepsirrhine counterparts. The inclusion of strepsirrhine zinc fingers completes the primate phylogeny. Moreover, the updated phylogeny of zinc fingers showed distinct clusters of strepsirrhine, tarsier, and anthropoid degenerated zinc fingers. Here, we show that emerged on the branch leading to the most recent common ancestor of catarrhines; therefore, its origin is more recent than previously expected. A more detailed character evolutionary study suggests that may have evolved differently in Cercopithecoidea as compared to Hominoidea: it lacks the first four exons in Old World monkeys orthologs and exon 10 in Papionini orthologs. Dating the origin of is essential for further studies investigating why Hominoidea representatives need another putative histone methyltransferase in the testis.

摘要

对模型系统中[具体基因名称未给出]的功能及其在脊椎动物分化过程中的进化研究,揭示了杂种不育的基本分子机制及其进化后果。然而,关于其同源物[具体基因名称未给出](其起源位于灵长类进化树中)的信息,以及关于狐猴型PRDM9快速进化的DNA结合锌指阵列的信息却很稀少。因此,我们旨在通过比较PRDM直系同源物和旁系同源物的代表性灵长类样本的系统发育树重建,来缩小导致灵长类进化过程中[具体基因名称未给出]出现的复制事件的日期。为了确认我们的旁系同源化模式,使用数据库中存储的序列来测试从旁系同源化时间预期的存在/缺失模式。此外,我们用狐猴型锌指扩展了现有的类人猿型[具体基因名称未给出]锌指的系统发育树。狐猴型锌指的纳入完善了[具体基因名称未给出]的灵长类系统发育。此外,更新后的[具体基因名称未给出]锌指系统发育显示出狐猴型、眼镜猴型和类人猿型退化锌指的明显聚类。在这里,我们表明[具体基因名称未给出]出现在导致狭鼻猴类最近共同祖先的分支上;因此,它的起源比以前预期的更近。一项更详细的特征进化研究表明,与类人猿超科相比,[具体基因名称未给出]在猴科中可能有不同的进化:它在旧世界猴直系同源物中缺少前四个外显子,在狒狒属直系同源物中缺少外显子10。确定[具体基因名称未给出]的起源对于进一步研究类人猿超科代表为何在睾丸中需要另一种假定的组蛋白甲基转移酶至关重要。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/392d/7943923/4dad53a5662b/fgene-12-593725-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/392d/7943923/5705b094f1c2/fgene-12-593725-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/392d/7943923/4d5f1e943e26/fgene-12-593725-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/392d/7943923/4dad53a5662b/fgene-12-593725-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/392d/7943923/5705b094f1c2/fgene-12-593725-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/392d/7943923/4d5f1e943e26/fgene-12-593725-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/392d/7943923/4dad53a5662b/fgene-12-593725-g003.jpg

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Zinc Finger Domain of the PRDM9 Gene on Chromosome 1 Exhibits High Diversity in Ruminants but Its Paralog PRDM7 Contains Multiple Disruptive Mutations.1号染色体上PRDM9基因的锌指结构域在反刍动物中表现出高度多样性,但其旁系同源基因PRDM7含有多个破坏性突变。
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