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微卫星标记濒危的僧伽罗海豚(Pontoporia blainvillei)。

Microsatellite markers for the endangered franciscana dolphin (Pontoporia blainvillei).

机构信息

Laboratório de Mamíferos Aquáticos e Bioindicadores, Universidade do Estado do Rio de Janeiro, Rio de Janeiro, Brazil.

Programa de Pós-Graduação em Biodiversidade e Biologia Evolutiva, Universidade Federal do Rio de Janeiro, Rio de Janeiro, Brazil.

出版信息

Mol Biol Rep. 2021 Mar;48(3):3011-3016. doi: 10.1007/s11033-021-06263-7. Epub 2021 Mar 16.

DOI:10.1007/s11033-021-06263-7
PMID:33725282
Abstract

The franciscana (Pontoporia blainvillei) is the most threatened small cetacean in the South Atlantic. In this study we report the development of 13 microsatellite markers for franciscanas through next-generation sequencing, and the characterization of those loci in 38 samples from the species' northernmost population (Espírito Santo, Brazil). Besides providing diversity indices for the new, specific loci, we also report on the transferability of heterologous loci which had not been screened in franciscanas before, and review all loci used in previous studies. Expected heterozygosity in the new loci ranged between 0.107 and 0.595, and all but one were in Hardy Weinberg Equilibrium. These are the first microsatellite loci isolated from franciscanas, and they are an important addition to heterologous markers that were available previously.

摘要

弗朗西斯科鳀(Pontoporia blainvillei)是南大西洋受威胁最大的小型鲸目动物。在这项研究中,我们通过下一代测序开发了 13 个弗朗西斯科鳀微卫星标记,并对来自该物种最北部种群(巴西的圣埃斯皮里图州)的 38 个样本进行了这些基因座的特征描述。除了为新的、特定的基因座提供多样性指数外,我们还报告了之前未在弗朗西斯科鳀中筛选过的异源基因座的可转移性,并回顾了以前研究中使用的所有基因座。新基因座的预期杂合度在 0.107 到 0.595 之间,除一个外,其余均处于 Hardy Weinberg 平衡状态。这些是首次从弗朗西斯科鳀中分离出来的微卫星基因座,它们是之前可用的异源标记的重要补充。

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本文引用的文献

1
Patterns of population structure at microsatellite and mitochondrial DNA markers in the franciscana dolphin ().弗朗西斯科纳海豚微卫星和线粒体DNA标记的种群结构模式()。 (括号内原文缺失具体内容)
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Population structure of the endangered franciscana dolphin (Pontoporia blainvillei): reassessing management units.濒危弗氏海豚(Pontoporia blainvillei)的种群结构:重新评估管理单元
PLoS One. 2014 Jan 31;9(1):e85633. doi: 10.1371/journal.pone.0085633. eCollection 2014.
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Sten 和 Sotalia 海豚的系统发育地位和多样化时间尺度。
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Population genetic structure and social kin associations of franciscana dolphin, Pontoporia blainvillei.弗朗西斯科氏海豚的群体遗传结构和社会亲缘关系。
J Hered. 2012 Jan-Feb;103(1):92-102. doi: 10.1093/jhered/esr103. Epub 2011 Oct 19.
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Microsatellite loci for population and parentage analysis in the Amazon River dolphin (Inia geoffrensis de Blainville, 1817).用于亚马孙河豚(Inia geoffrensis de Blainville, 1817)种群和亲子分析的微卫星位点。
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7
QDD: a user-friendly program to select microsatellite markers and design primers from large sequencing projects.QDD:一个用户友好的程序,用于从大型测序项目中选择微卫星标记和设计引物。
Bioinformatics. 2010 Feb 1;26(3):403-4. doi: 10.1093/bioinformatics/btp670. Epub 2009 Dec 10.
8
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Mol Ecol. 2005 Feb;14(2):599-612. doi: 10.1111/j.1365-294X.2004.02419.x.
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Microsatellites in the bottlenose dolphin Tursiops truncatus.宽吻海豚(Tursiops truncatus)中的微卫星
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Microsatellite markers for the study of cetacean populations.用于研究鲸类种群的微卫星标记。
Mol Ecol. 1996 Feb;5(1):151-6. doi: 10.1111/j.1365-294x.1996.tb00301.x.