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嗜热真菌 Chaetomium thermophilum 的 Cu,Zn 超氧化物歧化酶的晶体结构。

Crystal Structure of a Cu,Zn Superoxide Dismutase From the Thermophilic Fungus Chaetomium thermophilum.

机构信息

Turku Bioscience Centre, University of Turku and Åbo Akademi University, Turku 20521, Finland.

Department of Mycology, Shandong Agricultural University, Taian, Shandong 271018, China.

出版信息

Protein Pept Lett. 2021;28(9):1043-1053. doi: 10.2174/0929866528666210316104919.

Abstract

BACKGROUND

Thermophilic fungi have recently emerged as a promising source of thermostable enzymes. Superoxide dismutases are key antioxidant metalloenzymes with promising therapeutic effects in various diseases, both acute and chronic. However, structural heterogeneity and low thermostability limit their therapeutic efficacy.

OBJECTIVE

Although several studies from hypethermophilic superoxide dismutases (SODs) have been reported, information about Cu,Zn-SODs from thermophilic fungi is scarce. Chaetomium thermophilum is a thermophilic fungus that could provide proteins with thermophilic properties.

METHODS

The enzyme was expressed in Pichia pastoris cells and crystallized using the vapor-diffusion method. X-ray data were collected, and the structure was determined and refined to 1.56 Å resolution. Structural analysis and comparisons were carried out.

RESULTS

The presence of 8 molecules (A through H) in the asymmetric unit resulted in four different interfaces. Molecules A and F form the typical homodimer which is also found in other Cu,Zn- SODs. Zinc was present in all subunits of the structure while copper was found in only four subunits with reduced occupancy (C, D, E and F).

CONCLUSION

The ability of the enzyme to form oligomers and the elevated Thr:Ser ratio may be contributing factors to its thermal stability. Two hydrophobic residues that participate in interface formation and are not present in other CuZn-SODs may play a role in the formation of new interfaces and the oligomerization process. The CtSOD crystal structure reported here is the first Cu,Zn-SOD structure from a thermophilic fungus.

摘要

背景

嗜热真菌最近成为热稳定酶的有前途的来源。超氧化物歧化酶是关键的抗氧化金属酶,在各种急性和慢性疾病中都具有有前景的治疗效果。然而,结构异质性和低热稳定性限制了它们的治疗效果。

目的

虽然已经报道了来自嗜热菌的几种超氧化物歧化酶(SOD)的研究,但有关嗜热真菌的 Cu,Zn-SOD 的信息却很少。嗜热毛壳菌是一种嗜热真菌,可以提供具有嗜热特性的蛋白质。

方法

该酶在巴斯德毕赤酵母细胞中表达,并通过气相扩散法进行结晶。收集 X 射线数据,并确定和细化结构至 1.56Å分辨率。进行了结构分析和比较。

结果

在不对称单元中存在 8 个分子(A 至 H),导致了 4 个不同的界面。分子 A 和 F 形成了典型的同源二聚体,也存在于其他 Cu,Zn-SOD 中。锌存在于结构的所有亚基中,而铜仅存在于四个亚基中(C、D、E 和 F),占据率降低。

结论

酶形成寡聚体的能力和升高的 Thr:Ser 比可能是其热稳定性的贡献因素。两个参与界面形成但不存在于其他 CuZn-SOD 中的疏水性残基可能在新界面和寡聚化过程的形成中发挥作用。本文报道的 CtSOD 晶体结构是第一个来自嗜热真菌的 Cu,Zn-SOD 结构。

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