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巴西圣保罗州不同地区延迟献血的病毒组比较。

Virome comparison of deferred blood donations obtained from different geographic regions in the Sao Paulo State, Brazil.

机构信息

Blood Center of Ribeirao Preto, Faculty of Medicine of Ribeirao Preto, University of Sao Paulo, Ribeirao Preto, Sao Paulo, Brazil.

Hospital "Albert Einstein", Sao Paulo, Sao Paulo, Brazil.

出版信息

Transfus Apher Sci. 2021 Jun;60(3):103106. doi: 10.1016/j.transci.2021.103106. Epub 2021 Mar 10.

DOI:10.1016/j.transci.2021.103106
PMID:33726974
Abstract

The virome composition of blood units deferred due to symptomatic disease of the donors reported after blood donation may reveal novel or unsuspected viral agents which may have impact in the area of hemotherapy. The objective of this study was to compare the virome of blood donations obtained from two distantly located blood collecting institutions in the Saqo Paulo State and deferred from use due to post donation illness reports (PDIR). Plasma samples with PDIR due to different symptoms were collected in two cities of the Sao Paulo State (Sao Paulo city, 28 samples and Ribeirao Preto city, 11 samples). The samples were assembled in pools and sequenced in Illumina NextSeq 550 sequencer. The obtained raw sequencing data was analyzed using bioinformatic pipeline aiming viral identification. Phylogenetic classification of the most important contigs was also performed. The virome composition of the plasma samples obtained in both cities was different. This was more pronounced for some specific anellovirus types and the human pegivirus-1 (HPgV-1) which were exclusively found among donations obtained from the city of Sao Paulo. On the other hand, in PDIR samples from Ribeirao Preto, Dengue -2 reads were more abundant compared to commensal viral representatives. The obtained virome findings show that the differential viral abundance is related to geographic localization and specific disease endemicity. The virome of PDIR samples may be used to more profoundly analyze the hypothetic transfusion threats in a given location.

摘要

由于献血后出现症状性疾病而延迟使用的血液单位的病毒组组成可能揭示出新型或未被怀疑的病毒因子,这些因子可能会对血液疗法领域产生影响。本研究的目的是比较来自两个相距较远的血液采集机构的血液捐赠的病毒组,这些捐赠因献血后疾病报告(PDIR)而延迟使用。从圣保罗州的两个城市(圣保罗市 28 个样本和里贝朗普雷托市 11 个样本)收集了因不同症状而导致 PDIR 的血浆样本。将这些样本组装成池,并在 Illumina NextSeq 550 测序仪上进行测序。使用生物信息学管道对获得的原始测序数据进行分析,以识别病毒。还对最重要的连续序列进行了系统发育分类。从两个城市获得的血浆样本的病毒组组成不同。对于某些特定的圆环病毒类型和人类戊型肝炎病毒-1(HPgV-1),这种差异更为明显,这些病毒仅在从圣保罗市获得的捐赠中发现。另一方面,与肠道病毒代表相比,里贝朗普雷托的 PDIR 样本中登革热-2 的读数更为丰富。所获得的病毒组发现表明,病毒丰度的差异与地理位置和特定疾病的地方性有关。PDIR 样本的病毒组可用于更深入地分析特定地点的假设输血威胁。

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