Yang Jianhua, Tu Ran, Yuan Huiling, Wang Qinhong, Zhu Leilei
Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, Tianjin, China.
National Technology Innovation Center of Synthetic Biology, Tianjin, China.
Crit Rev Biotechnol. 2021 Nov;41(7):1023-1045. doi: 10.1080/07388551.2021.1898326. Epub 2021 Mar 17.
Enzymes and cell factories play essential roles in industrial biotechnology for the production of chemicals and fuels. The properties of natural enzymes and cells often cannot meet the requirements of different industrial processes in terms of cost-effectiveness and high durability. To rapidly improve their properties and performances, laboratory evolution equipped with high-throughput screening methods and facilities is commonly used to tailor the desired properties of enzymes and cell factories, addressing the challenges of achieving high titer and the yield of the target products at high/low temperatures or extreme pH, in unnatural environments or in the presence of unconventional media. Droplet microfluidic screening (DMFS) systems have demonstrated great potential for exploring vast genetic diversity in a high-throughput manner (>10/h) for laboratory evolution and have been increasingly used in recent years, contributing to the identification of extraordinary mutants. This review highlights the recent advances in concepts and methods of DMFS for library screening, including the key factors in droplet generation and manipulation, signal sources for sensitive detection and sorting, and a comprehensive summary of success stories of DMFS implementation for engineering enzymes and cell factories during the past decade.
酶和细胞工厂在用于生产化学品和燃料的工业生物技术中发挥着至关重要的作用。就成本效益和高耐用性而言,天然酶和细胞的特性往往无法满足不同工业过程的要求。为了快速改善它们的特性和性能,配备高通量筛选方法和设施的实验室定向进化通常用于定制酶和细胞工厂的所需特性,以应对在高/低温或极端pH值、非自然环境或存在非常规介质的情况下实现高滴度和目标产物产量的挑战。液滴微流控筛选(DMFS)系统已显示出以高通量方式(>10/小时)探索巨大遗传多样性以进行实验室定向进化的巨大潜力,并且近年来越来越多地被使用,有助于鉴定出非凡的突变体。本综述重点介绍了用于文库筛选的DMFS概念和方法的最新进展,包括液滴生成和操作中的关键因素、灵敏检测和分选的信号源,以及对过去十年中DMFS用于工程酶和细胞工厂的成功案例的全面总结。