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sp PO1基因组中生物膜形成的迹象。

Signs of biofilm formation in the genome of sp PO1.

作者信息

Zaynab Madiha, Chen Huirong, Chen Yufei, Ouyang Liao, Yang Xuewei, Hu Zhangli, Li Shuangfei

机构信息

College of Physics and Optoelectronic Engineering, Shenzhen University, Shenzhen 518060, China.

Shenzhen Key Laboratory of Marine Bioresource & Eco-environmental Sciences, College of Life Sciences and Oceanography, Shenzhen University, Shenzhen, Guangdong 518071, China.

出版信息

Saudi J Biol Sci. 2021 Mar;28(3):1900-1912. doi: 10.1016/j.sjbs.2020.12.041. Epub 2020 Dec 31.

DOI:10.1016/j.sjbs.2020.12.041
PMID:33732076
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7938128/
Abstract

sp. are important components of marine ecology which play a key role in biochemical cycling. In this study, we isolated the sp. PO1 strain capable of forming biofilm, from the  culture. Growth analysis revealed that strain reached a logarithmic growth period at 24 hours. The whole genome of 6.21813 Mb of  sp. PO1 was sequenced and assembled into 15 scaffolds and 16 contigs, each with minimum and maximum lengths of 644 and 1,744,114 Mb. A total of 3,566 genes were classified into five pathways and 31 pathway groups. Of them, 521 genes encoded biofilm formation proteins, quorum sensing (QS) proteins, and ABC transporters. Gene Ontology annotation identified 49,272 genes that were involved in biological processes (33,425 genes), cellular components (7,031genes), and molecular function (7,816 genes). We recognised genes involved in bacterial quorum sensing, attachment, motility, and chemotaxis to investigate bacteria's ability to interact with the diatom phycosphere. As revealed by KEGG pathway analysis, several genes encoding ABC transporters exhibited a significant role during the growth and development of sp. PO1, indicating that ABC transporters may be involved in signalling pathways that enhance growth and biofilm formation.

摘要

[具体物种名称]是海洋生态的重要组成部分,在生物化学循环中起关键作用。在本研究中,我们从[具体培养物来源]培养物中分离出了能够形成生物膜的[具体物种名称]PO1菌株。生长分析表明,该菌株在24小时时进入对数生长期。对[具体物种名称]PO1的6.21813 Mb全基因组进行了测序,并组装成15个支架和16个重叠群,每个的最小和最大长度分别为644和1,744,114 Mb。共有3566个基因被分类到五个途径和31个途径组中。其中,521个基因编码生物膜形成蛋白、群体感应(QS)蛋白和ABC转运蛋白。基因本体注释鉴定出49272个基因参与生物过程(33425个基因)、细胞成分(7031个基因)和分子功能(7816个基因)。我们识别了参与细菌群体感应、附着、运动和趋化作用的基因,以研究细菌与硅藻藻际相互作用的能力。正如KEGG途径分析所揭示的,几个编码ABC转运蛋白的基因在[具体物种名称]PO1的生长和发育过程中发挥了重要作用,表明ABC转运蛋白可能参与了增强生长和生物膜形成的信号通路。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c1f7/7938128/5a3bc8c82efd/gr8.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c1f7/7938128/0cbababb7c20/gr1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c1f7/7938128/9c8cba83ad8c/gr2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c1f7/7938128/a16a2997e913/gr3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c1f7/7938128/ac45aac221d5/gr4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c1f7/7938128/16a12da3281d/gr5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c1f7/7938128/41fe594680a6/gr6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c1f7/7938128/58fc5a608de6/gr7.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c1f7/7938128/5a3bc8c82efd/gr8.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c1f7/7938128/0cbababb7c20/gr1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c1f7/7938128/9c8cba83ad8c/gr2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c1f7/7938128/a16a2997e913/gr3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c1f7/7938128/ac45aac221d5/gr4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c1f7/7938128/16a12da3281d/gr5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c1f7/7938128/41fe594680a6/gr6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c1f7/7938128/58fc5a608de6/gr7.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c1f7/7938128/5a3bc8c82efd/gr8.jpg

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