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一种用于 COVID-19 的新型一体化快速诊断技术。

A novel One-pot rapid diagnostic technology for COVID-19.

机构信息

MOE International Joint Lab for Synthetic Biology and Medicines, School of Biology and Biological Engineering, South China University of Technology, Guangzhou, 510006, PR China.

Division of Laboratory Medicine, Guangdong Provincial People's Hospital, Guangdong Academy of Medical Sciences, Guangzhou, 510000, PR China.

出版信息

Anal Chim Acta. 2021 Apr 15;1154:338310. doi: 10.1016/j.aca.2021.338310. Epub 2021 Feb 11.

Abstract

Novel coronavirus disease (COVID-19) caused by SARS-CoV-2 is an ongoing global pandemic associated with high rates of morbidity and mortality. RT-qPCR has become the diagnostic standard for the testing of SARS-CoV-2 in most countries. COVID-19 diagnosis generally relies upon RT-qPCR-mediated identification of SARS-CoV-2 viral RNA, which is costly, labor-extensive, and requires specialized training and equipment. Herein, we established a novel one-tube rapid diagnostic approach based upon formamide and colorimetric RT-LAMP (One-Pot RT-LAMP) that can be used to diagnose COVID-19 without the extraction of specific viral RNA. The technique could visually detect SARS-CoV-2 within 45 min with a limit of detection of 5 copies per reaction in extracted RNA, and about 7.66 virus copies per μL in viral transport medium. The One-Pot RT-LAMP test showed a high specificity without cross-reactivity with 12 viruses including SARS-CoV, MERS-CoV, and human infectious influenza virus (H1N1/H3N2 of influenza A and B virus, ect. We validated this One-Pot RT-LAMP approach by its successful use for the analysis of 45 clinical nasopharyngeal swab samples, yielding results identical to those of traditional RT-qPCR analyses, while achieving good selectivity and sensitivity relative to a commercial RT-qPCR approach. As such, this One-Pot RT-LAMP technology may be a valid means of conducting high-sensitivity, low-cost and rapid SARS-CoV-2 identification without the extraction of viral RNA.

摘要

由严重急性呼吸系统综合征冠状病毒 2 (SARS-CoV-2)引起的新型冠状病毒病(COVID-19)是一场持续的全球大流行,其发病率和死亡率都很高。实时荧光定量聚合酶链式反应(RT-qPCR)已成为大多数国家检测 SARS-CoV-2 的诊断标准。COVID-19 的诊断通常依赖于 RT-qPCR 介导的 SARS-CoV-2 病毒 RNA 识别,但这种方法成本高、劳动强度大,并且需要专门的培训和设备。在此,我们建立了一种基于甲酰胺和比色 RT-LAMP(One-Pot RT-LAMP)的新型单管快速诊断方法,可用于诊断 COVID-19,而无需提取特定的病毒 RNA。该技术可以在 45 分钟内通过提取 RNA 中每个反应的 5 个拷贝的检测限和病毒运输介质中约 7.66 个病毒拷贝/μL 的检测限来目视检测 SARS-CoV-2。One-Pot RT-LAMP 测试具有很高的特异性,与 12 种病毒(包括 SARS-CoV、MERS-CoV 和人类传染性流感病毒(甲型流感 A 和 B 病毒的 H1N1/H3N2 等))无交叉反应。我们通过成功分析 45 例临床鼻咽拭子样本验证了这种 One-Pot RT-LAMP 方法,其结果与传统 RT-qPCR 分析结果相同,而相对于商业 RT-qPCR 方法具有良好的选择性和灵敏度。因此,这种 One-Pot RT-LAMP 技术可能是一种有效的方法,可以在不提取病毒 RNA 的情况下进行高灵敏度、低成本和快速的 SARS-CoV-2 鉴定。

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