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[线粒体DNA甲基化:争议、问题与展望]

[Mitochondrial DNA methylation: Controversies, issues and perspectives].

作者信息

Leroux Émélie, Brosseau Cindy, Angers Bernard, Angers Annie, Breton Sophie

机构信息

Département de sciences biologiques, Université de Montréal, Campus MIL, Faculté des Arts et des Sciences, CP 6128, Succursale Centre-Ville, Montréal QC, H3C 3J7, Canada.

出版信息

Med Sci (Paris). 2021 Mar;37(3):258-264. doi: 10.1051/medsci/2021011. Epub 2021 Mar 19.

DOI:10.1051/medsci/2021011
PMID:33739273
Abstract

DNA methylation is an epigenetic mechanism that has been largely probed regarding eukaryotic nuclear genome and bacteria, and its role is especially crucial in the regulation of gene expression. In mammals, it is almost exclusively acting on a cytosine preceding a guanine (CpG), whereas it presents itself mainly in a non-CpG context in bacteria's DNA. Conversely to nuclear and bacterial genomes, the existence of methylation in the mitochondrial genome is still widely debated. This controversy has been attributed to structural differences between the nuclear and mitochondrial genomes, and to the techniques used to study methylation of cytosines, which were rather optimized for the study of nuclear DNA. However, novel studies suggest that cytosine methylation is truly existing in mitochondria, and that it is mostly found in a non-CpG context, just like in their evolutionary relative, the bacteria.

摘要

DNA甲基化是一种表观遗传机制,人们已对真核细胞核基因组和细菌进行了大量关于该机制的探究,其在基因表达调控中发挥着尤为关键的作用。在哺乳动物中,它几乎只作用于鸟嘌呤之前的胞嘧啶(CpG),而在细菌DNA中,它主要存在于非CpG环境中。与核基因组和细菌基因组相反,线粒体基因组中甲基化的存在仍存在广泛争议。这种争议归因于核基因组和线粒体基因组之间的结构差异,以及用于研究胞嘧啶甲基化的技术,这些技术在很大程度上是为研究核DNA而优化的。然而,新的研究表明,胞嘧啶甲基化确实存在于线粒体中,并且它大多存在于非CpG环境中,就像在与其具有进化关系的细菌中一样。

相似文献

1
[Mitochondrial DNA methylation: Controversies, issues and perspectives].[线粒体DNA甲基化:争议、问题与展望]
Med Sci (Paris). 2021 Mar;37(3):258-264. doi: 10.1051/medsci/2021011. Epub 2021 Mar 19.
2
The first mitochondrial 5-methylcytosine map in a non-model teleost (Oreochromis niloticus) reveals extensive strand-specific and non-CpG methylation.首个非模式硬骨鱼(尼罗罗非鱼)的线粒体5-甲基胞嘧啶图谱揭示了广泛的链特异性和非CpG甲基化。
Genomics. 2021 Sep;113(5):3050-3057. doi: 10.1016/j.ygeno.2021.07.007. Epub 2021 Jul 7.
3
Mitochondrial DNA Methylation and Related Disease.线粒体 DNA 甲基化与相关疾病。
Adv Exp Med Biol. 2017;1038:117-132. doi: 10.1007/978-981-10-6674-0_9.
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No evidence of extensive non-CpG methylation in mtDNA.未发现线粒体 DNA 中广泛的非 CpG 甲基化。
Nucleic Acids Res. 2022 Sep 9;50(16):9190-9194. doi: 10.1093/nar/gkac701.
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Technical adequacy of bisulfite sequencing and pyrosequencing for detection of mitochondrial DNA methylation: Sources and avoidance of false-positive detection.亚硫酸氢盐测序和焦磷酸测序检测线粒体DNA甲基化的技术充分性:假阳性检测的来源及避免方法
PLoS One. 2018 Feb 8;13(2):e0192722. doi: 10.1371/journal.pone.0192722. eCollection 2018.
6
Cytosine methylation is not the major factor inducing CpG dinucleotide deficiency in bacterial genomes.胞嘧啶甲基化不是导致细菌基因组中CpG二核苷酸缺乏的主要因素。
J Mol Evol. 2004 Jun;58(6):692-700. doi: 10.1007/s00239-004-2591-1.
7
DNA methyltransferase 1, cytosine methylation, and cytosine hydroxymethylation in mammalian mitochondria.哺乳动物线粒体中的 DNA 甲基转移酶 1、胞嘧啶甲基化和胞嘧啶羟甲基化。
Proc Natl Acad Sci U S A. 2011 Mar 1;108(9):3630-5. doi: 10.1073/pnas.1012311108. Epub 2011 Feb 14.
8
Single-molecule mitochondrial DNA sequencing shows no evidence of CpG methylation in human cells and tissues.单分子线粒体 DNA 测序显示人类细胞和组织中不存在 CpG 甲基化的证据。
Nucleic Acids Res. 2021 Dec 16;49(22):12757-12768. doi: 10.1093/nar/gkab1179.
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The methylation of nuclear and mitochondrial DNA in ageing phenotypes and longevity.衰老表型和长寿中的核 DNA 和线粒体 DNA 甲基化。
Mech Ageing Dev. 2017 Jul;165(Pt B):156-161. doi: 10.1016/j.mad.2017.01.006. Epub 2017 Jan 20.
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The molecular characterisation of mitochondrial DNA deficient oocytes using a pig model.使用猪模型对线粒体 DNA 缺乏的卵母细胞进行分子特征分析。
Hum Reprod. 2018 May 1;33(5):942-953. doi: 10.1093/humrep/dey052.

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