• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

将马来西亚砂拉越一个热带泥炭丘的原核生物群落组成与碳生物地球化学循环联系起来。

Linking prokaryotic community composition to carbon biogeochemical cycling across a tropical peat dome in Sarawak, Malaysia.

作者信息

Dom Simon Peter, Ikenaga Makoto, Lau Sharon Yu Ling, Radu Son, Midot Frazer, Yap Mui Lan, Chin Mei-Yee, Lo Mei Lieng, Jee Mui Sie, Maie Nagamitsu, Melling Lulie

机构信息

Sarawak Tropical Peat Research Institute, Lot 6035, Kuching-Samarahan Expressway, 94300, Kota Samarahan, Sarawak, Malaysia.

Department of Food Science, Faculty of Food Science and Technology, Universiti Putra Malaysia, 43400, Serdang, Selangor, Malaysia.

出版信息

Sci Rep. 2021 Mar 19;11(1):6416. doi: 10.1038/s41598-021-81865-6.

DOI:10.1038/s41598-021-81865-6
PMID:33742002
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7979770/
Abstract

Tropical peat swamp forest is a global store of carbon in a water-saturated, anoxic and acidic environment. This ecosystem holds diverse prokaryotic communities that play a major role in nutrient cycling. A study was conducted in which a total of 24 peat soil samples were collected in three forest types in a tropical peat dome in Sarawak, Malaysia namely, Mixed Peat Swamp (MPS), Alan Batu (ABt), and Alan Bunga (ABg) forests to profile the soil prokaryotic communities through meta 16S amplicon analysis using Illumina Miseq. Results showed these ecosystems were dominated by anaerobes and fermenters such as Acidobacteria, Proteobacteria, Actinobacteria and Firmicutes that cover 80-90% of the total prokaryotic abundance. Overall, the microbial community composition was different amongst forest types and depths. Additionally, this study highlighted the prokaryotic communities' composition in MPS was driven by higher humification level and lower pH whereas in ABt and ABg, the less acidic condition and higher organic matter content were the main factors. It was also observed that prokaryotic diversity and abundance were higher in the more oligotrophic ABt and ABg forest despite the constantly waterlogged condition. In MPS, the methanotroph Methylovirgula ligni was found to be the major species in this forest type that utilize methane (CH), which could potentially be the contributing factor to the low CH gas emissions. Aquitalea magnusonii and Paraburkholderia oxyphila, which can degrade aromatic compounds, were the major species in ABt and ABg forests respectively. This information can be advantageous for future study in understanding the underlying mechanisms of environmental-driven alterations in soil microbial communities and its potential implications on biogeochemical processes in relation to peatland management.

摘要

热带泥炭沼泽森林是一个处于水饱和、缺氧和酸性环境中的全球碳库。这个生态系统拥有多样的原核生物群落,它们在养分循环中发挥着重要作用。在马来西亚沙捞越州一个热带泥炭穹顶的三种森林类型中,即混合泥炭沼泽(MPS)、阿兰 Batu(ABt)和阿兰 Bunga(ABg)森林,总共采集了24个泥炭土样本,通过使用Illumina Miseq的元16S扩增子分析来描绘土壤原核生物群落。结果表明,这些生态系统以厌氧菌和发酵菌为主,如酸杆菌门、变形菌门、放线菌门和厚壁菌门,它们占原核生物总丰度的80 - 90%。总体而言,不同森林类型和深度的微生物群落组成不同。此外,这项研究强调,MPS中原核生物群落的组成是由较高的腐殖化水平和较低的pH值驱动的,而在ABt和ABg中,酸性较低的条件和较高的有机质含量是主要因素。还观察到,尽管始终处于涝渍状态,但在营养更贫瘠的ABt和ABg森林中,原核生物的多样性和丰度更高。在MPS中,发现木质甲基嗜甲基菌是该森林类型中利用甲烷(CH)的主要物种,这可能是导致低CH气体排放的一个因素。分别能降解芳香化合物的大氏水生菌和嗜氧副伯克霍尔德菌是ABt和ABg森林中的主要物种。这些信息对于未来理解环境驱动的土壤微生物群落变化的潜在机制及其对泥炭地管理相关生物地球化学过程的潜在影响的研究可能是有利的。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/afcc/7979770/19b2e1dfb8ff/41598_2021_81865_Fig5a_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/afcc/7979770/4e02f447cc94/41598_2021_81865_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/afcc/7979770/c932f6bfc652/41598_2021_81865_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/afcc/7979770/ed952e81aeeb/41598_2021_81865_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/afcc/7979770/50e7ca663751/41598_2021_81865_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/afcc/7979770/19b2e1dfb8ff/41598_2021_81865_Fig5a_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/afcc/7979770/4e02f447cc94/41598_2021_81865_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/afcc/7979770/c932f6bfc652/41598_2021_81865_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/afcc/7979770/ed952e81aeeb/41598_2021_81865_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/afcc/7979770/50e7ca663751/41598_2021_81865_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/afcc/7979770/19b2e1dfb8ff/41598_2021_81865_Fig5a_HTML.jpg

相似文献

1
Linking prokaryotic community composition to carbon biogeochemical cycling across a tropical peat dome in Sarawak, Malaysia.将马来西亚砂拉越一个热带泥炭丘的原核生物群落组成与碳生物地球化学循环联系起来。
Sci Rep. 2021 Mar 19;11(1):6416. doi: 10.1038/s41598-021-81865-6.
2
Are secondary forests second-rate? Comparing peatland greenhouse gas emissions, chemical and microbial community properties between primary and secondary forests in Peninsular Malaysia.次生林是二等品吗?比较马来西亚半岛原生林和次生林泥炭地温室气体排放、化学和微生物群落特性。
Sci Total Environ. 2019 Mar 10;655:220-231. doi: 10.1016/j.scitotenv.2018.11.046. Epub 2018 Nov 8.
3
Evaluation on the decomposability of tropical forest peat soils after conversion to an oil palm plantation.评价热带森林泥炭土转为油棕种植园后的分解性。
Sci Total Environ. 2017 Jun 1;587-588:381-388. doi: 10.1016/j.scitotenv.2017.02.165. Epub 2017 Feb 24.
4
Distinct Anaerobic Bacterial Consumers of Cellobiose-Derived Carbon in Boreal Fens with Different CO2/CH4 Production Ratios.在具有不同二氧化碳/甲烷产生比率的北方沼泽中,纤维二糖衍生碳的独特厌氧细菌消费者
Appl Environ Microbiol. 2017 Feb 1;83(4). doi: 10.1128/AEM.02533-16. Print 2017 Feb 15.
5
Ecosystem-scale methane flux in tropical peat swamp forest in Indonesia.印度尼西亚热带泥炭沼泽森林的生态系统尺度甲烷通量。
Glob Chang Biol. 2018 Nov;24(11):5123-5136. doi: 10.1111/gcb.14410. Epub 2018 Sep 2.
6
Geographical variation in soil bacterial community structure in tropical forests in Southeast Asia and temperate forests in Japan based on pyrosequencing analysis of 16S rRNA.基于16S rRNA焦磷酸测序分析的东南亚热带森林和日本温带森林土壤细菌群落结构的地理变异。
Genes Genet Syst. 2017 Sep 12;92(1):1-20. doi: 10.1266/ggs.16-00013. Epub 2016 Dec 21.
7
Soil CO and CH fluxes from different forest types in tropical peat swamp forest.热带泥炭沼泽林不同森林类型的土壤 CO 和 CH 通量。
Sci Total Environ. 2023 Feb 1;858(Pt 2):159973. doi: 10.1016/j.scitotenv.2022.159973. Epub 2022 Nov 5.
8
Contrasting Effects of Local Environmental and Biogeographic Factors on the Composition and Structure of Bacterial Communities in Arid Monospecific Mangrove Soils.干旱单一种群红树林土壤中细菌群落组成和结构的局部环境和生物地理因素的对比影响。
Microbiol Spectr. 2022 Feb 23;10(1):e0090321. doi: 10.1128/spectrum.00903-21. Epub 2022 Jan 5.
9
Soil microbial community response to ectomycorrhizal dominance in diverse neotropical montane forests.土壤微生物群落对不同新热带山地森林中外生菌根主导地位的响应。
Mycorrhiza. 2024 Apr;34(1-2):95-105. doi: 10.1007/s00572-023-01134-4. Epub 2024 Jan 6.
10
Soil bacterial community structure in five tropical forests in Malaysia and one temperate forest in Japan revealed by pyrosequencing analyses of 16S rRNA gene sequence variation.通过对16S rRNA基因序列变异进行焦磷酸测序分析揭示马来西亚五个热带森林和日本一个温带森林中的土壤细菌群落结构。
Genes Genet Syst. 2013;88(2):93-103. doi: 10.1266/ggs.88.93.

引用本文的文献

1
Temporal dynamics of soil microbial C and N cycles with GHG fluxes in the transition from tropical peatland forest to oil palm plantation.从热带泥炭地森林向油棕种植园转变过程中,土壤微生物碳氮循环与温室气体通量的时间动态变化。
Appl Environ Microbiol. 2025 Jan 31;91(1):e0198624. doi: 10.1128/aem.01986-24. Epub 2024 Dec 23.
2
Tropical peat soil changes across successive oil palm generations in Sarawak, Malaysia.马来西亚砂拉越地区连续几代油棕种植下的热带泥炭土变化
Heliyon. 2024 Sep 10;10(18):e37754. doi: 10.1016/j.heliyon.2024.e37754. eCollection 2024 Sep 30.
3
Stable composition of gut microbiome in the Asian ladybeetle Coccinella septempunctata reared on natural and artificial diets.

本文引用的文献

1
Genomic Features and Insights into the Taxonomy, Virulence, and Benevolence of Plant-Associated Species.植物相关物种的分类学、毒力和有益性的基因组特征和见解。
Int J Mol Sci. 2018 Dec 29;20(1):121. doi: 10.3390/ijms20010121.
2
Microbial Community Structure in a Malaysian Tropical Peat Swamp Forest: The Influence of Tree Species and Depth.马来西亚热带泥炭沼泽森林中的微生物群落结构:树种和深度的影响
Front Microbiol. 2018 Dec 4;9:2859. doi: 10.3389/fmicb.2018.02859. eCollection 2018.
3
Bacterial contributions to delignification and lignocellulose degradation in forest soils with metagenomic and quantitative stable isotope probing.
在天然和人工饲料上饲养的七星瓢虫(Coccinella septempunctata)肠道微生物组的稳定组成。
Sci Rep. 2024 Jan 2;14(1):71. doi: 10.1038/s41598-023-49885-6.
4
Genome-resolved carbon processing potential of tropical peat microbiomes from an oil palm plantation.解析热带油棕种植园中泥炭微生物组的基因组解析碳处理潜力。
Sci Data. 2023 Jun 8;10(1):373. doi: 10.1038/s41597-023-02267-z.
5
Improved Assembly of Metagenome-Assembled Genomes and Viruses in Tibetan Saline Lake Sediment by HiFi Metagenomic Sequencing.通过 HiFi 宏基因组测序提高西藏盐湖沉积物宏基因组组装和病毒组装。
Microbiol Spectr. 2023 Feb 14;11(1):e0332822. doi: 10.1128/spectrum.03328-22. Epub 2022 Dec 8.
6
Impact of Physicochemical Parameters on the Diversity and Distribution of Microbial Communities Associated with Three South African Peatlands.物理化学参数对与南非三个泥炭地相关的微生物群落多样性和分布的影响
Microorganisms. 2022 Oct 23;10(11):2103. doi: 10.3390/microorganisms10112103.
7
Effects of Strigolactone on Gene Expression and Soil Microbial Community Structure Under Simulated Nitrogen Deposition.独脚金内酯在模拟氮沉降条件下对基因表达和土壤微生物群落结构的影响
Front Plant Sci. 2022 Jun 2;13:908129. doi: 10.3389/fpls.2022.908129. eCollection 2022.
利用宏基因组和定量稳定同位素探测技术研究森林土壤中细菌对木质素脱木质和木质纤维素降解的贡献。
ISME J. 2019 Feb;13(2):413-429. doi: 10.1038/s41396-018-0279-6. Epub 2018 Sep 26.
4
Biologically driven DOC release from peatlands during recovery from acidification.生物驱动的泥炭地在酸化恢复过程中 DOC 的释放。
Nat Commun. 2018 Sep 18;9(1):3807. doi: 10.1038/s41467-018-06259-1.
5
Tropical peatland carbon storage linked to global latitudinal trends in peat recalcitrance.热带泥炭地碳储存与泥炭抗降解性的全球纬度趋势有关。
Nat Commun. 2018 Sep 7;9(1):3640. doi: 10.1038/s41467-018-06050-2.
6
Litter quality drives the differentiation of microbial communities in the litter horizon across an alpine treeline ecotone in the eastern Tibetan Plateau.凋落物质量在青藏高原东部高山林线交错带的凋落物层中驱动微生物群落的分化。
Sci Rep. 2018 Jul 3;8(1):10029. doi: 10.1038/s41598-018-28150-1.
7
Identification of Syntrophobacteraceae as major acetate-degrading sulfate reducing bacteria in Italian paddy soil.鉴定意大利稻田土壤中的互营乙酸盐脱硫菌为主要的乙酸盐降解硫酸盐还原菌。
Environ Microbiol. 2018 Jan;20(1):337-354. doi: 10.1111/1462-2920.14001. Epub 2017 Dec 21.
8
Deciphering Diversity Indices for a Better Understanding of Microbial Communities.解读多样性指数以更好地理解微生物群落
J Microbiol Biotechnol. 2017 Dec 28;27(12):2089-2093. doi: 10.4014/jmb.1709.09027.
9
Draft genome sequence of an endophytic bacterium, strain SUK123, isolated from stem.从茎中分离出的内生细菌SUK123菌株的基因组序列草图。
Genom Data. 2017 Aug 17;14:44-46. doi: 10.1016/j.gdata.2017.08.005. eCollection 2017 Dec.
10
Draft Genome Sequence of Strain H3, a Plant Growth-Promoting Bacterium of Duckweed ().浮萍促生细菌H3菌株的基因组序列草图()
Genome Announc. 2017 Aug 17;5(33):e00812-17. doi: 10.1128/genomeA.00812-17.