Haruna Emmanuel, Zin Noraziah M, Adams Jonathan M
Programme of Biomedical Science, School of Diagnostic and Applied Health Sciences, Faculty of Health Sciences, Universiti Kebangsaan Malaysia, Kuala Lumpur, Malaysia.
Department of Biochemistry Kaduna State University, Kaduna, Nigeria.
Genom Data. 2017 Aug 17;14:44-46. doi: 10.1016/j.gdata.2017.08.005. eCollection 2017 Dec.
Here we report the draft genome sequence of an endophytic strain isolated from the Universiti Kebangsaan Malaysia reserve forest, Malaysia. The genome size was approximately 8.04 Mb, and the assembly consisted of 107 scaffolds with 168 contigs, and had a G + C content of 53%. Phylogenetic analysis of strain SUK123 using the 16S rRNA gene revealed that it belonged to the family with the highest similarity to SD (99%). Whole genome comparison of SUK123 with related species using average nucleotide identity (ANI) analysis revealed a similarity of 98% to Mst1, 94% to B69, 91% to A2, 68% to SC2 and 69% to DMS29. The draft genome was deposited at the European Nucleotide Archive (PRJEB21373).
在此，我们报告了从马来西亚国民大学自然保护区分离出的一株内生菌株的基因组序列草图。基因组大小约为8.04 Mb，组装结果由107个支架和168个重叠群组成，G + C含量为53%。使用16S rRNA基因对菌株SUK123进行系统发育分析表明，它属于与SD相似度最高（99%）的科。使用平均核苷酸同一性（ANI）分析对SUK123与相关物种进行全基因组比较，结果显示与Mst1的相似度为98%，与B69的相似度为94%，与A2的相似度为91%，与SC2的相似度为68%，与DMS29的相似度为69%。该基因组草图已保存在欧洲核苷酸档案库（PRJEB21373）中。
