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突出膜蛋白结构和功能:纪念蛋白质数据库。

Highlighting membrane protein structure and function: A celebration of the Protein Data Bank.

机构信息

Department of Biochemistry and Biophysics, University of California San Francisco, San Francisco, California, USA; Department of Neurology, University of California San Francisco, San Francisco, California, USA.

Department of Biological Chemistry, School of Medicine, University of California Los Angeles, Los Angeles, California, USA.

出版信息

J Biol Chem. 2021 Jan-Jun;296:100557. doi: 10.1016/j.jbc.2021.100557. Epub 2021 Mar 18.

Abstract

Biological membranes define the boundaries of cells and compartmentalize the chemical and physical processes required for life. Many biological processes are carried out by proteins embedded in or associated with such membranes. Determination of membrane protein (MP) structures at atomic or near-atomic resolution plays a vital role in elucidating their structural and functional impact in biology. This endeavor has determined 1198 unique MP structures as of early 2021. The value of these structures is expanded greatly by deposition of their three-dimensional (3D) coordinates into the Protein Data Bank (PDB) after the first atomic MP structure was elucidated in 1985. Since then, free access to MP structures facilitates broader and deeper understanding of MPs, which provides crucial new insights into their biological functions. Here we highlight the structural and functional biology of representative MPs and landmarks in the evolution of new technologies, with insights into key developments influenced by the PDB in magnifying their impact.

摘要

生物膜界定了细胞的边界,并使生命所需的化学和物理过程在细胞内分隔开。许多生物过程都是由嵌入或与这些膜相关的蛋白质来执行的。在原子或近原子分辨率下确定膜蛋白 (MP) 的结构,对于阐明它们在生物学中的结构和功能影响至关重要。截至 2021 年初,这项工作已经确定了 1198 种独特的 MP 结构。自 1985 年首次解析出原子 MP 结构以来,这些结构的三维(3D)坐标被存入蛋白质数据库(PDB),大大增加了这些结构的价值。此后,免费获取 MP 结构使得人们能够更广泛和深入地了解 MPs,从而为它们的生物学功能提供了至关重要的新见解。在这里,我们重点介绍了具有代表性的 MPs 的结构和功能生物学,以及新技术发展中的里程碑事件,深入了解了受 PDB 影响而放大其影响力的关键发展。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8437/8102919/d88920d43492/gr1.jpg

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