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利用计算生物学增强极端微生物来源的α-淀粉酶稳定性和催化活性的分子策略。

Molecular strategies to enhance stability and catalysis of extremophile-derived α-amylase using computational biology.

机构信息

School of Studies in Biotechnology, Pt. Ravishankar Shukla University, Raipur, CG, 492010, India.

Department of Botany, Govt. College, Bichhua, Chhindwara, MP, 480111, India.

出版信息

Extremophiles. 2021 May;25(3):221-233. doi: 10.1007/s00792-021-01223-2. Epub 2021 Mar 22.


DOI:10.1007/s00792-021-01223-2
PMID:33754213
Abstract

α-Amylase is the most significant glycoside hydrolase having applications in various industries. It cleaves the α,1-4 glucosidic linkages of polysaccharides like starch, glycogen to yield a small polymer of glucose in α-anomeric configuration. α-Amylase is produced by all the three domains of life but microorganisms are preferred sources for industrial-scale production due to several advantages. Enormous studies and research have been done in this field in the past few decades. Still, it is requisite to work on enzyme stability and catalysis, as it loses its functionality in extreme. As the enzyme loses its structural and catalytic property under extreme environmental conditions, it is mandatory to confer some potential strategies for enhancing enzyme behaviour in such conditions. This limitation of an enzyme can be overcome up to some extent by extremophiles. They serve as an excellent source of α-amylase with outstanding features. This review is an attempt to encapsulate some structure-based strategies for improving enzyme behaviour thereby enabling researchers to selectively amend any of the strategies as per requirement during upstream and downstream processing for higher enzyme yield and stability. Thus, it will provide some cutting-edge strategies for tailoring α-amylase producing organism and enzyme with the help of several computational biology tools.

摘要

α-淀粉酶是最重要的糖苷水解酶,在许多行业中有应用。它能切割淀粉、糖原等多糖中的α,1-4 糖苷键,生成具有α-构型的葡萄糖小聚合物。α-淀粉酶存在于生命的三个领域,但由于其具有多种优势,微生物是工业规模生产的首选来源。在过去几十年中,该领域进行了大量的研究和探索。然而,仍需要研究酶的稳定性和催化作用,因为在极端条件下,酶会失去功能。由于酶在极端环境条件下会失去结构和催化特性,因此必须提出一些潜在的策略来增强酶在这种条件下的行为。在某种程度上,极端微生物可以克服酶的这种局限性。它们是具有突出特性的α-淀粉酶的极好来源。本文综述了一些基于结构的策略,以改善酶的行为,从而使研究人员能够根据需要在上下游处理过程中选择性地采用任何策略,以提高酶的产量和稳定性。因此,它将提供一些前沿的策略,以帮助利用多种计算生物学工具来定制产α-淀粉酶的生物体和酶。

相似文献

[1]
Molecular strategies to enhance stability and catalysis of extremophile-derived α-amylase using computational biology.

Extremophiles. 2021-5

[2]
Aspects and Recent Trends in Microbial α-Amylase: a Review.

Appl Biochem Biotechnol. 2021-8

[3]
Molecular improvements in microbial α-amylases for enhanced stability and catalytic efficiency.

Bioresour Technol. 2017-4-27

[4]
Exploration of computational approaches to predict the structural features and recent trends in α-amylase production for industrial applications.

Biotechnol Bioeng. 2023-8

[5]
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Microb Cell Fact. 2019-10-26

[6]
Purification and Characterization of Natural Solid-Substrate Degrading and Alcohol Producing Hyperthermostable Alkaline Amylase from Bacillus cereus (sm-sr14).

Curr Pharm Biotechnol. 2020

[7]
Rational Engineering of a Cold-Adapted α-Amylase from the Antarctic Ciliate Euplotes focardii for Simultaneous Improvement of Thermostability and Catalytic Activity.

Appl Environ Microbiol. 2017-6-16

[8]
A new group of glycoside hydrolase family 13 α-amylases with an aberrant catalytic triad.

Sci Rep. 2017-3-13

[9]
Structure-based modification of a-amylase by conventional and emerging technologies: Comparative study on the secondary structure, activity, thermal stability and amylolysis efficiency.

Food Chem. 2024-3-30

[10]
Structural and functional adaptation in extremophilic microbial α-amylases.

Biophys Rev. 2022-1-24

引用本文的文献

[1]
Computational design of α-amylase from to increase its activity and stability at high temperatures.

Comput Struct Biotechnol J. 2024-2-13

[2]
Heterologous Expression and Characterization of a Novel Mesophilic Maltogenic α-Amylase AmyFlA from Flavobacterium sp. NAU1659.

Appl Biochem Biotechnol. 2024-9

本文引用的文献

[1]
Copper and cadmium impair sperm performance, fertilization and hatching of oocytes from Amazonian fish Colossoma macropomum.

Chemosphere. 2021-3

[2]
Optimisation and production of alpha amylase from thermophilic spp. and its application in food waste biodegradation.

Heliyon. 2020-6-13

[3]
Production of a novel α-amylase by Bacillus atrophaeus NRC1 isolated from honey: Purification and characterization.

Int J Biol Macromol. 2020-1-13

[4]
A new GH13 subfamily represented by the α-amylase from the halophilic archaeon Haloarcula hispanica.

Extremophiles. 2019-11-16

[5]
Site-saturation mutagenesis at amino acid 329 of Klebsiella pneumoniae halophilic α-amylase affects enzymatic properties.

J Biosci Bioeng. 2019-9-28

[6]
A novel high maltose-forming α-amylase from Rhizomucor miehei and its application in the food industry.

Food Chem. 2019-8-30

[7]
The optimized production, purification, characterization, and application in the bread making industry of three acid-stable alpha-amylases isoforms from a new isolated Bacillus subtilis strain US586.

J Food Biochem. 2019-3-20

[8]
Purification and characterization of a novel wild-type α-amylase from Antarctic sea ice bacterium Pseudoalteromonas sp. M175.

Protein Expr Purif. 2019-12

[9]
Purification, biochemical, and molecular characterization of a novel extracellular thermostable and alkaline α-amylase from Tepidimonas fonticaldi strain HB23.

Int J Biol Macromol. 2019-3-27

[10]
High-level expression of a novel α-amylase from Thermomyces dupontii in Pichia pastoris and its application in maltose syrup production.

Int J Biol Macromol. 2019-1-29

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