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嗜极微生物α-淀粉酶的结构与功能适应性

Structural and functional adaptation in extremophilic microbial α-amylases.

作者信息

Ahmad Aziz, Mishra Rajesh

机构信息

School of Biotechnology, Jawaharlal Nehru University, New Delhi, 110,067 India.

出版信息

Biophys Rev. 2022 Jan 24;14(2):499-515. doi: 10.1007/s12551-022-00931-z. eCollection 2022 Apr.


DOI:10.1007/s12551-022-00931-z
PMID:35528036
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9043155/
Abstract

Maintaining stable native conformation of a protein under a given ecological condition is the prerequisite for survival of organisms. Extremophilic bacteria and archaea have evolved to adapt under extreme conditions of temperature, pH, salt, and pressure. Molecular adaptations of proteins under these conditions are essential for their survival. These organisms have the capability to maintain stable, native conformations of proteins under extreme conditions. The enzymes produced by the extremophiles are also known as extremozyme, which are used in several industries. Stability and functionality of extremozymes under varying temperature, pH, and solvent conditions are the most desirable requirement of industry. α-Amylase is one of the most important enzymes used in food, pharmaceutical, textile, and detergent industries. This enzyme is produced by diverse microorganisms including various extremophiles. Therefore, understanding its stability is important from fundamental as well as an applied point of view. Each class of extremophiles has a distinctive set of dominant non-covalent interactions which are important for their stability. Static information obtained by comparative analysis of amino acid sequence and atomic resolution structure provides information on the prevalence of particular amino acids or a group of non-covalent interactions. Protein folding studies give the information about thermodynamic and kinetic stability in order to understand dynamic aspect of molecular adaptations. In this review, we have summarized information on amino acid sequence, structure, stability, and adaptability of α-amylases from different classes of extremophiles.

摘要

在特定生态条件下维持蛋白质稳定的天然构象是生物体生存的前提。嗜极细菌和古菌已经进化到能够在极端的温度、pH值、盐度和压力条件下生存。蛋白质在这些条件下的分子适应性对其生存至关重要。这些生物体有能力在极端条件下维持蛋白质稳定的天然构象。嗜极生物产生的酶也被称为极端酶,在多个行业都有应用。极端酶在不同温度、pH值和溶剂条件下的稳定性和功能性是工业上最理想的要求。α-淀粉酶是食品、制药、纺织和洗涤剂行业中使用的最重要的酶之一。这种酶由包括各种嗜极生物在内的多种微生物产生。因此,从基础和应用的角度理解其稳定性都很重要。每一类嗜极生物都有一组独特的主导非共价相互作用,这些相互作用对其稳定性很重要。通过氨基酸序列和原子分辨率结构的比较分析获得的静态信息提供了特定氨基酸或一组非共价相互作用普遍存在的信息。蛋白质折叠研究给出了关于热力学和动力学稳定性的信息,以便了解分子适应性的动态方面。在这篇综述中,我们总结了来自不同类嗜极生物的α-淀粉酶的氨基酸序列、结构、稳定性和适应性的信息。

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Structural and functional adaptation in extremophilic microbial α-amylases.

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[2]
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[3]
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本文引用的文献

[1]
Differential effect of polyol and sugar osmolytes on the refolding of homologous alpha amylases: A comparative study.

Biophys Chem. 2022-2

[2]
Multifunctional alkalophilic α-amylase with diverse raw seaweed degrading activities.

AMB Express. 2021-10-20

[3]
Amylases from thermophilic bacteria: structure and function relationship.

Crit Rev Biotechnol. 2022-5

[4]
Linking thermodynamics and measurements of protein stability.

Protein Eng Des Sel. 2021-2-15

[5]
Biosynthesis and industrial applications of α-amylase: a review.

Arch Microbiol. 2021-5

[6]
Recent Development of Extremophilic Bacteria and Their Application in Biorefinery.

Front Bioeng Biotechnol. 2020-6-12

[7]
Computer simulations explain the anomalous temperature optimum in a cold-adapted enzyme.

Nat Commun. 2020-5-26

[8]
Different unfolding pathways of homologous alpha amylases from Bacillus licheniformis (BLA) and Bacillus amyloliquefaciens (BAA) in GdmCl and urea.

Int J Biol Macromol. 2020-9-15

[9]
Alkaliphiles: The Versatile Tools in Biotechnology.

Adv Biochem Eng Biotechnol. 2020

[10]
The tale of a versatile enzyme: Alpha-amylase evolution, structure, and potential biotechnological applications for the bioremediation of n-alkanes.

Chemosphere. 2020-2-18

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