Suppr超能文献

对来自通用粪便库供体的样本进行 16S rRNA 测序。

16S rRNA sequencing of samples from universal stool bank donors.

机构信息

OpenBiome, 2067 Massachusetts Ave, Cambridge, MA, 02140, USA.

出版信息

BMC Res Notes. 2021 Mar 23;14(1):108. doi: 10.1186/s13104-021-05520-z.

Abstract

OBJECTIVES

Universal stool banks provide stool to physicians for use in treating recurrent Clostridioides difficile infection via fecal microbiota transplantation. Stool donors providing the material are rigorously screened for diseases and disorders with a potential microbiome etiology, and they are likely healthier than the controls in most microbiome datasets. 16S rRNA sequencing was performed on samples from a selection of stool donors at a large stool bank, OpenBiome, to characterize their gut microbial community and to compare samples across different timepoints and sequencing runs.

DATA DESCRIPTION

16S rRNA sequencing was performed on 200 samples derived from 170 unique stool donations from 86 unique donors. Samples were sequenced on 11 different sequencing runs. We are making this data available because rigorously screened, likely very healthy stool donors may be useful for characterizing and understanding microbial community differences across different populations and will help shed light into the how the microbiome community promotes health and disease.

摘要

目的

通用粪便库为医生提供粪便,用于通过粪便微生物群移植治疗复发性艰难梭菌感染。提供材料的粪便捐赠者经过严格筛选,以排除具有潜在微生物组病因的疾病和障碍,并且他们可能比大多数微生物组数据集的对照组更健康。对大型粪便库 OpenBiome 中的一组粪便捐赠者的样本进行了 16S rRNA 测序,以描述他们的肠道微生物群落,并比较不同时间点和测序运行的样本。

数据描述

从 86 位独特供体的 170 个独特粪便捐赠中提取了 200 个样本进行了 16S rRNA 测序。样本在 11 个不同的测序运行中进行了测序。我们提供此数据,是因为经过严格筛选的、可能非常健康的粪便供体可能有助于描述和理解不同人群之间微生物群落的差异,并有助于了解微生物群落如何促进健康和疾病。

相似文献

1
16S rRNA sequencing of samples from universal stool bank donors.
BMC Res Notes. 2021 Mar 23;14(1):108. doi: 10.1186/s13104-021-05520-z.
2
Stool Banking for Fecal Microbiota Transplantation: Methods and Operations at a Large Stool Bank.
Front Cell Infect Microbiol. 2021 Apr 15;11:622949. doi: 10.3389/fcimb.2021.622949. eCollection 2021.
3
Faecal microbiota transplantation for infection: Four years' experience of the Netherlands Donor Feces Bank.
United European Gastroenterol J. 2020 Dec;8(10):1236-1247. doi: 10.1177/2050640620957765. Epub 2020 Sep 29.
4
Laboratory Testing of Donors and Stool Samples for Fecal Microbiota Transplantation for Recurrent Clostridium difficile Infection.
J Clin Microbiol. 2017 Apr;55(4):1002-1010. doi: 10.1128/JCM.02327-16. Epub 2017 Jan 11.
5
A comprehensive approach to stool donor screening for faecal microbiota transplantation in China.
Microb Cell Fact. 2021 Nov 27;20(1):216. doi: 10.1186/s12934-021-01705-0.
6
Establishing a Fecal Microbiota Transplant Service for the Treatment of Clostridium difficile Infection.
Clin Infect Dis. 2016 Apr 1;62(7):908-14. doi: 10.1093/cid/civ994. Epub 2015 Nov 30.
9
Ethical implications of recruiting universal stool donors for faecal microbiota transplantation.
Lancet Infect Dis. 2020 Mar;20(3):e44-e49. doi: 10.1016/S1473-3099(19)30569-9. Epub 2019 Nov 26.

引用本文的文献

1
Study on biotransformation and absorption of genistin based on fecal microbiota and Caco-2 cell.
Front Pharmacol. 2024 Oct 9;15:1437020. doi: 10.3389/fphar.2024.1437020. eCollection 2024.

本文引用的文献

1
Stool Banking for Fecal Microbiota Transplantation: Methods and Operations at a Large Stool Bank.
Front Cell Infect Microbiol. 2021 Apr 15;11:622949. doi: 10.3389/fcimb.2021.622949. eCollection 2021.
2
Donor Screening for Fecal Microbiota Transplantation.
N Engl J Med. 2019 Nov 21;381(21):2070-2072. doi: 10.1056/NEJMc1913670. Epub 2019 Oct 30.
3
A library of human gut bacterial isolates paired with longitudinal multiomics data enables mechanistic microbiome research.
Nat Med. 2019 Sep;25(9):1442-1452. doi: 10.1038/s41591-019-0559-3. Epub 2019 Sep 2.
4
5
Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2.
Nat Biotechnol. 2019 Aug;37(8):852-857. doi: 10.1038/s41587-019-0209-9.
6
American Gut: an Open Platform for Citizen Science Microbiome Research.
mSystems. 2018 May 15;3(3). doi: 10.1128/mSystems.00031-18. eCollection 2018 May-Jun.
8
Deblur Rapidly Resolves Single-Nucleotide Community Sequence Patterns.
mSystems. 2017 Mar 7;2(2). doi: 10.1128/mSystems.00191-16. eCollection 2017 Mar-Apr.
9
Structure, function and diversity of the healthy human microbiome.
Nature. 2012 Jun 13;486(7402):207-14. doi: 10.1038/nature11234.
10
Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy.
Appl Environ Microbiol. 2007 Aug;73(16):5261-7. doi: 10.1128/AEM.00062-07. Epub 2007 Jun 22.

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验