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VIRdb 2.0:基于共表达网络的方法分析与白癜风发病机制相关的合并症条件的交互式分析。

VIRdb 2.0: Interactive analysis of comorbidity conditions associated with vitiligo pathogenesis using co-expression network-based approach.

机构信息

Amity Institute of Biotechnology, Amity University, Noida, Uttar Pradesh, 201301, India.

出版信息

F1000Res. 2020 Aug 27;9:1055. doi: 10.12688/f1000research.25713.2. eCollection 2020.

Abstract

Vitiligo is a disease of mysterious origins in the context of its occurrence and pathogenesis. The autoinflammatory theory is perhaps the most widely accepted theory that discusses the occurrence of Vitiligo. The theory elaborates the clinical association of vitiligo with autoimmune disorders such as Psoriasis, Multiple Sclerosis and Rheumatoid Arthritis and Diabetes. In the present work, we discuss the comprehensive set of differentially co-expressed genes involved in the crosstalk events between Vitiligo and associated autoimmune disorders (Psoriasis, Multiple Sclerosis and Rheumatoid Arthritis). We progress our previous tool, Vitiligo Information Resource (VIRdb), and incorporate into it a compendium of Vitiligo-related multi-omics datasets and present it as VIRdb 2.0. It is available as a web-resource consisting of statistically sound and manually curated information. VIRdb 2.0 is an integrative database as its datasets are connected to KEGG, STRING, GeneCards, SwissProt, NPASS. Through the present study, we communicate the major updates and expansions in the VIRdb and deliver the new version as VIRdb 2.0. VIRdb 2.0 offers the maximum user interactivity along with ease of navigation. We envision that VIRdb 2.0 will be pertinent for the researchers and clinicians engaged in drug development for vitiligo.

摘要

白癜风是一种发病机制不明的疾病。自身炎症理论可能是最广泛接受的讨论白癜风发生的理论。该理论阐述了白癜风与银屑病、多发性硬化症、类风湿性关节炎和糖尿病等自身免疫性疾病的临床关联。在本工作中,我们讨论了涉及白癜风与相关自身免疫性疾病(银屑病、多发性硬化症和类风湿性关节炎)之间串扰事件的差异共表达基因的综合组。我们改进了以前的工具,白癜风信息资源(VIRdb),并将其纳入白癜风相关多组学数据集的概要,并将其呈现为 VIRdb 2.0。它是一个由具有统计意义且经过人工整理的信息组成的网络资源。VIRdb 2.0 是一个集成数据库,因为它的数据集与 KEGG、STRING、GeneCards、SwissProt、NPASS 相连。通过本研究,我们交流了 VIRdb 的主要更新和扩展,并作为 VIRdb 2.0 提供新版本。VIRdb 2.0 提供了最大的用户交互性和易于导航。我们设想,VIRdb 2.0 将对从事白癜风药物开发的研究人员和临床医生具有重要意义。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/faa2/7953919/0e71b75dcd94/f1000research-9-54266-g0000.jpg

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