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非共价键的无轨道量子晶体学视角:对氢键、π⋅⋅⋅π和反向电子孤对⋅⋅⋅π相互作用的洞察

Orbital-Free Quantum Crystallographic View on Noncovalent Bonding: Insights into Hydrogen Bonds, π⋅⋅⋅π and Reverse Electron Lone Pair⋅⋅⋅π Interactions.

作者信息

Shteingolts Sergey A, Stash Adam I, Tsirelson Vladimir G, Fayzullin Robert R

机构信息

Arbuzov Institute of Organic and Physical Chemistry FRC Kazan Scientific Center, Russian Academy of Sciences, 8 Arbuzov Street, Kazan, 420088, Russian Federation.

A.N. Nesmeyanov Institute of Organoelement Compounds Russian Academy of Sciences, 28 Vavilov Street, Moscow, 119991, Russian Federation.

出版信息

Chemistry. 2021 May 17;27(28):7789-7809. doi: 10.1002/chem.202005497. Epub 2021 Apr 16.

DOI:10.1002/chem.202005497
PMID:33769620
Abstract

A detailed analysis of a complete set of the local potentials that appear in the Euler equation for electron density is carried out for noncovalent interactions in the crystal of a uracil derivative using experimental X-ray charge density. The interplay between the quantum theory of atoms in molecules and crystals and the local potentials and corresponding inner-crystal electronic forces of electrostatic and kinetic origin is explored. Partitioning of crystal space into atomic basins and atomic-like potential basins led us to the definite description of interatomic interaction and charge transfer. Novel physically grounded bonding descriptors derived within the orbital-free quantum crystallography provided the detailed examination of π-stacking and intricate C=O⋅⋅⋅π interactions and nonclassical hydrogen bonds present in the crystal. The donor-acceptor character of these interactions is revealed by analysis of Pauli and von Weizsäcker potentials together with well-known functions, e. g., deformation electron density and electron localization function. In this way, our analysis throws light on aspects of these closed-shell interactions hitherto hidden from the description.

摘要

利用实验X射线电荷密度,对尿嘧啶衍生物晶体中非共价相互作用的电子密度欧拉方程中出现的一组完整的局域势进行了详细分析。探讨了分子和晶体中原子的量子理论与静电和动力学起源的局域势及相应的晶体内电子力之间的相互作用。将晶体空间划分为原子盆和类原子势盆,使我们能够明确描述原子间相互作用和电荷转移。在无轨道量子晶体学中导出的新型基于物理的键合描述符,对晶体中存在的π堆积、复杂的C=O⋅⋅⋅π相互作用和非经典氢键进行了详细研究。通过对泡利势和冯·魏茨泽克势以及诸如变形电子密度和电子定位函数等知名函数的分析,揭示了这些相互作用的供体-受体特征。通过这种方式,我们的分析揭示了这些闭壳层相互作用中迄今未被描述的方面。

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