Chen Yinbo, Matveev Victor
Department of Mathematical Sciences, New Jersey Institute of Technology, Newark, New Jersey.
Department of Mathematical Sciences, New Jersey Institute of Technology, Newark, New Jersey.
Biophys J. 2021 May 18;120(10):1942-1956. doi: 10.1016/j.bpj.2021.03.015. Epub 2021 Mar 23.
We examine closed-form approximations for the equilibrium Ca and buffer concentrations near a point Ca source representing a Ca channel, in the presence of a mobile buffer with two Ca binding sites activated sequentially and possessing distinct binding affinities and kinetics. This allows us to model the impact on Ca nanodomains of realistic endogenous Ca buffers characterized by cooperative Ca binding, such as calretinin. The approximations we present involve a combination or rational and exponential functions, whose parameters are constrained using the series interpolation method that we recently introduced for the case of simpler Ca buffers with a single Ca binding site. We conduct extensive parameter sensitivity analysis and show that the obtained closed-form approximations achieve reasonable qualitative accuracy for a wide range of buffer's Ca binding properties and other relevant model parameters. In particular, the accuracy of the derived approximants exceeds that of the rapid buffering approximation in large portions of the relevant parameter space.
我们研究了在存在具有两个依次激活且具有不同结合亲和力和动力学的钙结合位点的移动缓冲剂的情况下,靠近代表钙通道的点钙源处的平衡钙和缓冲剂浓度的封闭形式近似值。这使我们能够对具有协同钙结合特性的现实内源性钙缓冲剂(如钙视网膜蛋白)对钙纳米域的影响进行建模。我们提出的近似值涉及有理函数和指数函数的组合,其参数使用我们最近针对具有单个钙结合位点的更简单钙缓冲剂的情况引入的级数插值方法进行约束。我们进行了广泛的参数敏感性分析,并表明所获得的封闭形式近似值在广泛的缓冲剂钙结合特性和其他相关模型参数范围内实现了合理的定性准确性。特别是,在相关参数空间的大部分区域中,导出的近似值的准确性超过了快速缓冲近似值。