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PLoS Comput Biol. 2020 Jul 17;16(7):e1008015. doi: 10.1371/journal.pcbi.1008015. eCollection 2020 Jul.
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Simulating diffusion from a cluster of point sources using propagation integrals.使用传播积分模拟从点源群扩散。
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4
Cytosolic Ca Buffers Are Inherently Ca Signal Modulators.细胞质 Ca 缓冲剂是内在的 Ca 信号调节剂。
Cold Spring Harb Perspect Biol. 2020 Jan 2;12(1):a035543. doi: 10.1101/cshperspect.a035543.
5
Synaptotagmin Ca Sensors and Their Spatial Coupling to Presynaptic Ca Channels in Central Cortical Synapses.中枢皮质突触中突触结合蛋白钙传感器及其与突触前钙通道的空间偶联
Front Mol Neurosci. 2019 Jan 15;11:494. doi: 10.3389/fnmol.2018.00494. eCollection 2018.
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8
Padé Approximation of a Stationary Single-Channel Ca Nanodomain.静态单通道钙纳米域的帕德近似
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在具有两个结合位点的缓冲液存在下的固定钙纳米域。

Stationary Ca nanodomains in the presence of buffers with two binding sites.

作者信息

Chen Yinbo, Matveev Victor

机构信息

Department of Mathematical Sciences, New Jersey Institute of Technology, Newark, New Jersey.

Department of Mathematical Sciences, New Jersey Institute of Technology, Newark, New Jersey.

出版信息

Biophys J. 2021 May 18;120(10):1942-1956. doi: 10.1016/j.bpj.2021.03.015. Epub 2021 Mar 23.

DOI:10.1016/j.bpj.2021.03.015
PMID:33771472
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8204396/
Abstract

We examine closed-form approximations for the equilibrium Ca and buffer concentrations near a point Ca source representing a Ca channel, in the presence of a mobile buffer with two Ca binding sites activated sequentially and possessing distinct binding affinities and kinetics. This allows us to model the impact on Ca nanodomains of realistic endogenous Ca buffers characterized by cooperative Ca binding, such as calretinin. The approximations we present involve a combination or rational and exponential functions, whose parameters are constrained using the series interpolation method that we recently introduced for the case of simpler Ca buffers with a single Ca binding site. We conduct extensive parameter sensitivity analysis and show that the obtained closed-form approximations achieve reasonable qualitative accuracy for a wide range of buffer's Ca binding properties and other relevant model parameters. In particular, the accuracy of the derived approximants exceeds that of the rapid buffering approximation in large portions of the relevant parameter space.

摘要

我们研究了在存在具有两个依次激活且具有不同结合亲和力和动力学的钙结合位点的移动缓冲剂的情况下,靠近代表钙通道的点钙源处的平衡钙和缓冲剂浓度的封闭形式近似值。这使我们能够对具有协同钙结合特性的现实内源性钙缓冲剂(如钙视网膜蛋白)对钙纳米域的影响进行建模。我们提出的近似值涉及有理函数和指数函数的组合,其参数使用我们最近针对具有单个钙结合位点的更简单钙缓冲剂的情况引入的级数插值方法进行约束。我们进行了广泛的参数敏感性分析,并表明所获得的封闭形式近似值在广泛的缓冲剂钙结合特性和其他相关模型参数范围内实现了合理的定性准确性。特别是,在相关参数空间的大部分区域中,导出的近似值的准确性超过了快速缓冲近似值。