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转运RNA作为酵母基因组进化的驱动力

tRNAs as a Driving Force of Genome Evolution in Yeast.

作者信息

Guimarães Ana Rita, Correia Inês, Sousa Inês, Oliveira Carla, Moura Gabriela, Bezerra Ana Rita, Santos Manuel A S

机构信息

Department of Medical Sciences, Institute of Biomedicine - iBiMED, University of Aveiro, Aveiro, Portugal.

出版信息

Front Microbiol. 2021 Mar 11;12:634004. doi: 10.3389/fmicb.2021.634004. eCollection 2021.

DOI:10.3389/fmicb.2021.634004
PMID:33776966
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7990762/
Abstract

Transfer RNAs (tRNAs) are widely known for their roles in the decoding of the linear mRNA information into amino acid sequences of proteins. They are also multifunctional platforms in the translation process and have other roles beyond translation, including sensing amino acid abundance, interacting with the general stress response machinery, and modulating cellular adaptation, survival, and death. In this mini-review, we focus on the emerging role of tRNA genes in the organization and modification of the genomic architecture of yeast and the role of tRNA misexpression and decoding infidelity in genome stability, evolution, and adaption. We discuss published work showing how quickly tRNA genes can mutate to meet novel translational demands, how tRNAs speed up genome evolution, and how tRNA genes can be sites of genomic instability. We highlight recent works showing that loss of tRNA decoding fidelity and small alterations in tRNA expression have unexpected and profound impacts on genome stability. By dissecting these recent evidence, we hope to lay the groundwork that prompts future investigations on the mechanistic interplay between tRNAs and genome modification that likely triggers genome evolution.

摘要

转运RNA(tRNA)因其在将线性mRNA信息解码为蛋白质氨基酸序列中的作用而广为人知。它们也是翻译过程中的多功能平台,并且在翻译之外还具有其他作用,包括感知氨基酸丰度、与一般应激反应机制相互作用以及调节细胞适应、存活和死亡。在这篇小型综述中,我们重点关注tRNA基因在酵母基因组结构的组织和修饰中的新作用,以及tRNA表达错误和译码错误在基因组稳定性、进化和适应中的作用。我们讨论已发表的研究工作,这些工作展示了tRNA基因如何快速突变以满足新的翻译需求、tRNA如何加速基因组进化,以及tRNA基因如何成为基因组不稳定的位点。我们强调最近的研究工作表明,tRNA译码保真度的丧失和tRNA表达的微小改变对基因组稳定性具有意想不到的深远影响。通过剖析这些最新证据,我们希望为未来对tRNA与可能触发基因组进化的基因组修饰之间的机制相互作用的研究奠定基础。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6e11/7990762/2e11d268b732/fmicb-12-634004-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6e11/7990762/2e11d268b732/fmicb-12-634004-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6e11/7990762/2e11d268b732/fmicb-12-634004-g001.jpg

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2
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PLoS Genet. 2020 Feb 21;16(2):e1008632. doi: 10.1371/journal.pgen.1008632. eCollection 2020 Feb.
3
Determinants of Replication-Fork Pausing at tRNA Genes in .tRNA 基因处复制叉暂停的决定因素。
RNA 聚合酶 III 调控中染色质的构象变化。
Biochem Soc Trans. 2024 Jun 26;52(3):1173-1189. doi: 10.1042/BST20230770.
4
Locus-specific proteome decoding reveals Fpt1 as a chromatin-associated negative regulator of RNA polymerase III assembly.基因座特异性蛋白质组解码揭示Fpt1是RNA聚合酶III组装的染色质相关负调控因子。
Mol Cell. 2023 Dec 7;83(23):4205-4221.e9. doi: 10.1016/j.molcel.2023.10.037. Epub 2023 Nov 22.
5
Translin facilitates RNA polymerase II dissociation and suppresses genome instability during RNase H2- and Dicer-deficiency.Translin 促进 RNA 聚合酶 II 的解离,并在 RNase H2 和 Dicer 缺陷时抑制基因组不稳定性。
PLoS Genet. 2022 Jun 17;18(6):e1010267. doi: 10.1371/journal.pgen.1010267. eCollection 2022 Jun.
6
Eukaryotic tRNA sequences present conserved and amino acid-specific structural signatures.真核 tRNA 序列呈现出保守和氨基酸特异性的结构特征。
Nucleic Acids Res. 2022 Apr 22;50(7):4100-4112. doi: 10.1093/nar/gkac222.
Genetics. 2020 Apr;214(4):825-838. doi: 10.1534/genetics.120.303092. Epub 2020 Feb 18.
4
The balancing act of R-loop biology: The good, the bad, and the ugly.R 环生物学的平衡行为:好的、坏的和丑的。
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5
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6
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7
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8
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9
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