Department of Chemistry, Isfahan University of Technology, Isfahan, Iran.
Bioinformatics Lab., Department of Biology, School of Sciences, Razi University, Kermanshah, Iran.
J Biomol Struct Dyn. 2022 Oct;40(17):7940-7948. doi: 10.1080/07391102.2021.1905549. Epub 2021 Mar 30.
In response to the current pandemic caused by the novel SARS-CoV-2, we design new compounds based on Lopinavir structure as an FDA-approved antiviral agent which is currently under more evaluation in clinical trials for COVID-19 patients. This is the first example of the preparation of Lopinavir isosteres from the main core of Lopinavir conducted to various heterocyclic fragments. It is proposed that main protease inhibitors play an important role in the cycle life of coronavirus. Thus, the protease inhibition effect of synthesized compounds was studied by molecular docking method. All of these 10 molecules, showing a good docking score compared. Molecular dynamics (MD) simulations also confirmed the stability of the best-designed compound in Mpro active site.Communicated by Ramaswamy H. Sarma.
针对由新型 SARS-CoV-2 引起的当前大流行,我们基于洛匹那韦结构设计了新的化合物,作为一种已获得 FDA 批准的抗病毒药物,目前正在对 COVID-19 患者进行临床试验的更多评估。这是首次从洛匹那韦的主要核心到各种杂环片段制备洛匹那韦同系物的实例。据推测,主要蛋白酶抑制剂在冠状病毒的循环生命中起着重要作用。因此,通过分子对接方法研究了合成化合物的蛋白酶抑制作用。与所有这些 10 个分子相比,它们的对接得分都很好。分子动力学(MD)模拟也证实了最佳设计化合物在 Mpro 活性部位的稳定性。由 Ramaswamy H. Sarma 交流。