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组氨酸在矿物表面的自组装和稳定性作为前生物化学演化的模型:一种实验和计算方法。

Histidine Self-assembly and Stability on Mineral Surfaces as a Model of Prebiotic Chemical Evolution: An Experimental and Computational Approach.

机构信息

Facultad de Ciencias, Departamento de Física, UNAM, Apdo. Postal 70-407, C.P. 04510 Ciudad Universitaria, Ciudad de México, México.

Laboratorio de Evolución Química, Instituto de Ciencias Nucleares, Universidad Nacional Autónoma de México, Circuito Exterior S/N, Ciudad Universitaria Coyoacán, C.P. 04510, Ciudad de México, México.

出版信息

Orig Life Evol Biosph. 2021 Jun;51(2):117-130. doi: 10.1007/s11084-021-09606-3. Epub 2021 Mar 31.

DOI:10.1007/s11084-021-09606-3
PMID:33788055
Abstract

The abiotic synthesis of histidine under experimental prebiotic conditions has proven to be chemically promising and plausible. Within this context, the present results suggest that histidine amino acid may function as a simple prebiotic catalyst able to enhance amino acid polymerization. This work describes an experimental and computational approach to the self-assembly and stabilization of DL-histidine on mineral surfaces using antigorite ((Mg, Fe)SiO(OH)), pyrite (FeS), and aragonite (CaCO) as representative minerals of prebiotic scenarios, such as meteorites, and subaerial and submarine hydrothermal systems. Experimental results were obtained through polarized-light microscopy, IR spectroscopy (ATR-FTIR), and differential scanning calorimetry (DSC). Molecular dynamics was performed through computational simulations with the MM + method in HyperChem software. IR spectra suggest the presence of peptide bonds in the antigorite-histidine and aragonite-histidine assemblages with the presence of amide I and amide II vibration bands. The FTIR second derivative inspection supports this observation. Moreover, DSC data shows histidine stabilization in the presence of antigorite and aragonite by changes in histidine thermodynamic properties, particularly an increase in histidine decomposition temperature (272ºC in antigorite and 275ºC in aragonite). Results from molecular dynamics are consistent with DSC data, suggesting an antigorite-histidine closer interaction with decreased molecular distances (cca. 5.5 Å) between the amino acid and the crystal surface. On the whole, the experimental and computational outcomes support the role of mineral surfaces in prebiotic chemical evolution as enhancers of organic stability.

摘要

在实验性的前生物条件下,组氨酸的非生物合成已被证明在化学上是有前途和合理的。在这种情况下,目前的结果表明,组氨酸氨基酸可能作为一种简单的前生物催化剂,能够增强氨基酸聚合。本工作描述了一种实验和计算方法,用于使用蛇纹石((Mg,Fe)SiO(OH))、黄铁矿(FeS)和文石(CaCO)作为陨石和陆地和海底热液系统等前生物情景的代表性矿物,研究 DL-组氨酸在矿物表面上的自组装和稳定化。实验结果通过偏光显微镜、红外光谱(ATR-FTIR)和差示扫描量热法(DSC)获得。分子动力学通过 HyperChem 软件中的 MM + 方法进行计算模拟。红外光谱表明,在蛇纹石-组氨酸和文石-组氨酸组装体中存在肽键,酰胺 I 和酰胺 II 振动带。FTIR 二阶导数检验支持这一观察结果。此外,DSC 数据表明,在蛇纹石和文石存在的情况下,组氨酸的热力学性质发生变化,特别是组氨酸分解温度(蛇纹石为 272°C,文石为 275°C),从而稳定了组氨酸。分子动力学的结果与 DSC 数据一致,表明蛇纹石-组氨酸之间的相互作用更强,氨基酸与晶体表面之间的分子距离减小(约 5.5 Å)。总的来说,实验和计算结果支持矿物表面作为增强有机稳定性的前生物化学演化中的增强剂的作用。

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