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基因组足迹分析可检测腺病毒感染的HeLa细胞中与主要晚期启动子和IVa2启动子结合的因子。

Genomic footprinting detects factors bound to major late and IVa2 promoters in adenovirus-infected HeLa cells.

作者信息

Albrecht G, Devaux B, Kedinger C

机构信息

Laboratoire de Génétique Moléculaire des Eucaryotes du CNRS, Faculté de Médecine, Strasbourg, France.

出版信息

Mol Cell Biol. 1988 Apr;8(4):1534-9. doi: 10.1128/mcb.8.4.1534-1539.1988.

DOI:10.1128/mcb.8.4.1534-1539.1988
PMID:3380088
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC363313/
Abstract

We used DNase I footprinting assays on nuclei isolated from adenovirus-infected cells to examine the nucleoprotein configuration of a 250-base-pair segment which encompasses the adenovirus type 5 major late (ML) and IVa2 promoters. At 12 and 20 h postinfection (p.i.), fine DNase I digestion mapping of wild-type adenovirus-infected cells revealed specific sequences protected from digestion which corresponded to promoter elements required for expression of the ML gene in vivo. At 12 h p.i., a G+C-rich region which lies upstream of the IVa2 cap site and is important for maximal IVa2 activity was also found masked to nuclease activity. At 20 h p.i., however, this element became more sensitive to nuclease attack, while the ML promoter elements stayed protected. No major changes in DNA-protein interactions were detected in the region spanning the ML and IVa2 cap sites upon promoter activation, suggesting that the binding properties of the cognate factors for this region are not modified during the process.

摘要

我们对从腺病毒感染细胞中分离出的细胞核进行了DNA酶I足迹分析,以检查一个250碱基对片段的核蛋白结构,该片段包含腺病毒5型主要晚期(ML)和IVa2启动子。在感染后12小时和20小时,对野生型腺病毒感染细胞进行精细的DNA酶I消化图谱分析,发现有特定序列受到保护不被消化,这些序列对应于体内ML基因表达所需的启动子元件。在感染后12小时,还发现位于IVa2帽位点上游的一个富含G+C的区域对核酸酶活性有屏蔽作用,该区域对最大程度的IVa2活性很重要。然而,在感染后20小时,这个元件对核酸酶攻击变得更敏感,而ML启动子元件仍受到保护。在启动子激活后,跨越ML和IVa2帽位点的区域未检测到DNA-蛋白质相互作用的重大变化,这表明该区域同源因子的结合特性在这个过程中没有改变。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0fac/363313/97d9064a5910/molcellb00064-0166-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0fac/363313/fa0409a17a87/molcellb00064-0164-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0fac/363313/97d9064a5910/molcellb00064-0166-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0fac/363313/fa0409a17a87/molcellb00064-0164-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0fac/363313/97d9064a5910/molcellb00064-0166-a.jpg

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1
Genomic footprinting detects factors bound to major late and IVa2 promoters in adenovirus-infected HeLa cells.基因组足迹分析可检测腺病毒感染的HeLa细胞中与主要晚期启动子和IVa2启动子结合的因子。
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Replication-dependent activation of the adenovirus major late promoter is mediated by the increased binding of a transcription factor to sequences in the first intron.

本文引用的文献

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Transcripts from the adenovirus-2 major late promoter yield a single early family of 3' coterminal mRNAs and five late families.腺病毒2型主要晚期启动子的转录本产生一个3' 共末端mRNA的早期家族和五个晚期家族。
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Cooperation between upstream and downstream elements of the adenovirus major late promoter for maximal late phase-specific transcription.腺病毒主要晚期启动子上下游元件之间的合作以实现最大程度的晚期特异性转录。
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Anatomy of an unusual RNA polymerase II promoter containing a downstream TATA element.一个含有下游TATA元件的异常RNA聚合酶II启动子的剖析
Mol Cell Biol. 1992 Jun;12(6):2884-97. doi: 10.1128/mcb.12.6.2884-2897.1992.
7
Adenovirus DNA replication facilitates binding of the MLTF/USF transcription factor to the viral major late promoter within infected cells.腺病毒DNA复制促进MLTF/USF转录因子与受感染细胞内病毒主要晚期启动子的结合。
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腺病毒E1A基因产物激活早期病毒转录的机制。
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Nucleotide sequences from the adenovirus-2 genome.来自腺病毒2型基因组的核苷酸序列。
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Sequences upstream from the T-A-T-A box are required in vivo and in vitro for efficient transcription from the adenovirus serotype 2 major late promoter.腺病毒2型主要晚期启动子在体内和体外进行有效转录时,需要T-A-T-A框上游的序列。
Proc Natl Acad Sci U S A. 1982 Dec;79(23):7132-6. doi: 10.1073/pnas.79.23.7132.
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Promoters and heterogeneous 5' termini of the messenger RNAs of adenovirus serotype 2.腺病毒2型信使核糖核酸的启动子和异质性5'末端
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Cell. 1983 Jul;33(3):683-93. doi: 10.1016/0092-8674(83)90011-9.
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In vitro transcription from the adenovirus 2 major late promoter utilizing templates truncated at promoter-proximal sites.利用在启动子近端位点截短的模板,从腺病毒2型主要晚期启动子进行体外转录。
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Proximal and distal domains that control in vitro transcription of the adenovirus IVa2 gene.控制腺病毒IVa2基因体外转录的近端和远端结构域。
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10
The adenovirus major late promoter TATA box and initiation site are both necessary for transcription in vitro.腺病毒主要晚期启动子的TATA框和起始位点对于体外转录都是必需的。
Nucleic Acids Res. 1984 Oct 11;12(19):7423-33. doi: 10.1093/nar/12.19.7423.