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四种蛇尾纲动物的肠道微生物组成与多样性:悬浮取食者和清道夫及其共生微生物之间的差异

Gut Microbial Composition and Diversity in Four Ophiuroid Species: Divergence Between Suspension Feeder and Scavenger and Their Symbiotic Microbes.

作者信息

Dong Yue, Li Yixuan, He Peiqing, Wang Zongling, Fan Shiliang, Zhang Zhixin, Zhang Xuelei, Xu Qinzeng

机构信息

MNR Key Laboratory of Marine Eco-Environmental Science and Technology, First Institute of Oceanography, Ministry of Natural Resources, Qingdao, China.

Laboratory for Marine Ecology and Environmental Science, Pilot National Laboratory for Marine Science and Technology, Qingdao, China.

出版信息

Front Microbiol. 2021 Mar 19;12:645070. doi: 10.3389/fmicb.2021.645070. eCollection 2021.

Abstract

Gut microbiota have important roles in the survival and adaptation of the host. Ophiuroids, as the worldwide dominant benthos, have ecological roles in benthic-pelagic coupling in the sea floor. However, little is known about the composition and diversity of their gut microbiota and its potential functions in benthic ecosystems. In present study, we preformed 16S rRNA sequencing and function analysis in four dominant species (, , , and ) with two feeding types (suspension feeding/herbivores and scavenger/carnivores) from the Yellow Sea, China. Results showed that 56 phyla and 569 genera of microbiota were identified among ophiuroid guts. Multivariate and diversity analyses showed that the ophiuroid gut microbiota were independent and have higher biodiversity to the sediment microbial in the Yellow Sea. Phyla Proteobacteria, Firmicutes, Tenericutes, and Bacteroidetes were the dominant bacteria, with more than 80% abundance among the four ophiuroid species. A comparison among the gut microbial compositions among four ophiuroids showed the similarity of two offshore carnivore ophiuroids ( and ) and variation in the dominant microbiota types of three nearshore ophiuroids (, , and ). The functional analysis revealed the significant differences of the environment-related expression in gut microbiota between nearshore and offshore environments. The Phylogenetic Investigation of Communities by Reconstruction of Unobserved States (PICRUSt) functional annotation showed the significant divergence of metabolism pathways between two nearshore species, the herbivores and carnivores , such as the Lipid metabolism, Carbohydrate metabolism, and Metabolism of cofactors and vitamins. The homolog search and phylogenetic analysis identified the first gut symbiotic Hepatoplasma in with important roles for the nutrient metabolisms. Overall, our study reported the comprehensive data of ophiuroid gut microbiota, while the functional microbiome provides insight into the physiology and environmental adaptation in ophiuroids.

摘要

肠道微生物群在宿主的生存和适应中发挥着重要作用。蛇尾类作为全球占主导地位的底栖生物,在海底的底栖 - 水层耦合中具有生态作用。然而,关于它们肠道微生物群的组成和多样性及其在底栖生态系统中的潜在功能却知之甚少。在本研究中,我们对来自中国黄海的两种摄食类型(悬浮摄食/草食性和食腐动物/肉食性)的四个优势物种([此处四个物种名称缺失])进行了16S rRNA测序和功能分析。结果表明,在蛇尾类肠道中鉴定出了56个门和569个属的微生物群。多变量和多样性分析表明,蛇尾类肠道微生物群是独立的,并且与黄海沉积物微生物相比具有更高的生物多样性。变形菌门、厚壁菌门、柔膜菌门和拟杆菌门是优势细菌,在这四种蛇尾类物种中丰度超过80%。对四种蛇尾类肠道微生物组成的比较表明,两种近海肉食性蛇尾类([此处两个物种名称缺失])具有相似性,而三种近岸蛇尾类([此处三个物种名称缺失])的优势微生物群类型存在差异。功能分析揭示了近岸和近海环境中[此处物种名称缺失]肠道微生物群中与环境相关表达的显著差异。通过未观察状态重建进行群落系统发育研究(PICRUSt)功能注释表明,两种近岸物种,即草食性的[此处物种名称缺失]和肉食性的[此处物种名称缺失],在代谢途径上存在显著差异,如脂质代谢、碳水化合物代谢以及辅因子和维生素代谢。同源搜索和系统发育分析在[此处物种名称缺失]中鉴定出首个具有重要营养代谢作用的肠道共生菌肝浆菌属。总体而言,我们的研究报告了蛇尾类肠道微生物群的综合数据,而功能微生物组为深入了解蛇尾类的生理学和环境适应性提供了线索。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f66b/8017295/f4a4b4aa81b1/fmicb-12-645070-g001.jpg

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