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基于深度学习从模糊标签比例量化肿瘤病理微坏死的方法。

Method of Tumor Pathological Micronecrosis Quantification Via Deep Learning From Label Fuzzy Proportions.

出版信息

IEEE J Biomed Health Inform. 2021 Sep;25(9):3288-3299. doi: 10.1109/JBHI.2021.3071276. Epub 2021 Sep 3.

DOI:10.1109/JBHI.2021.3071276
PMID:33822729
Abstract

The presence of necrosis is associated with tumor progression and patient outcomes in many cancers, but existing analyses rarely adopt quantitative methods because the manual quantification of histopathological features is too expensive. We aim to accurately identify necrotic regions on hematoxylin and eosin (HE)-stained slides and to calculate the ratio of necrosis with minimal annotations on the images. An adaptive method named Learning from Label Fuzzy Proportions (LLFP) was introduced to histopathological image analysis. Two datasets of liver cancer HE slides were collected to verify the feasibility of the method by training on the internal set using cross validation and performing validation on the external set, along with ensemble learning to improve performance. The models from cross validation performed relatively stably in identifying necrosis, with a Concordance Index of the Slide Necrosis Score (CISNS) of 0.9165±0.0089 in the internal test set. The integration model improved the CISNS to 0.9341 and achieved a CISNS of 0.8278 on the external set. There were significant differences in survival (p = 0.0060) between the three groups divided according to the calculated necrosis ratio. The proposed method can build an integration model good at distinguishing necrosis and capable of clinical assistance as an automatic tool to stratify patients with different risks or as a cluster tool for the quantification of histopathological features. We presented a method effective for identifying histopathological features and suggested that the extent of necrosis, especially micronecrosis, in liver cancer is related to patient outcomes.

摘要

坏死的存在与许多癌症的肿瘤进展和患者预后相关,但现有的分析很少采用定量方法,因为对组织病理学特征的手动量化过于昂贵。我们旨在准确识别苏木精和伊红(HE)染色载玻片上的坏死区域,并在图像上进行最少注释的计算坏死比例。引入了一种名为从标签模糊比例中学习(LLFP)的自适应方法,用于组织病理学图像分析。收集了两个肝癌 HE 幻灯片数据集,通过在内部集上使用交叉验证进行训练和在外部集上进行验证来验证该方法的可行性,同时使用集成学习来提高性能。交叉验证的模型在识别坏死方面表现相对稳定,内部测试集的幻灯片坏死评分(CISNS)的一致性指数为 0.9165±0.0089。集成模型将 CISNS 提高到 0.9341,并在外部集上达到 0.8278 的 CISNS。根据计算出的坏死比例,三组患者的生存情况存在显著差异(p = 0.0060)。所提出的方法可以构建一个善于区分坏死的集成模型,作为一种自动工具,能够对具有不同风险的患者进行分层,或作为组织病理学特征量化的聚类工具,从而为临床提供辅助。我们提出了一种有效识别组织病理学特征的方法,并表明肝癌中坏死的程度,特别是微坏死,与患者预后相关。

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引用本文的文献

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Quantifying the recovery process of skeletal muscle on hematoxylin and eosin stained images via learning from label proportion.通过从标签比例中学习来量化苏木精和伊红染色图像中骨骼肌的恢复过程。
Sci Rep. 2024 Nov 7;14(1):27044. doi: 10.1038/s41598-024-78433-z.
2
Development and Validation of Novel Models Including Tumor Micronecrosis for Predicting the Postoperative Survival of Patients with Hepatocellular Carcinoma.包含肿瘤微坏死的新型模型的开发与验证,用于预测肝细胞癌患者的术后生存情况
J Hepatocell Carcinoma. 2023 Jul 25;10:1181-1194. doi: 10.2147/JHC.S423687. eCollection 2023.
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Tumor micronecrosis predicts poor prognosis of patients with hepatocellular carcinoma after liver transplantation.
肿瘤微坏死预示肝移植术后肝细胞肝癌患者预后不良。
BMC Cancer. 2023 Jan 25;23(1):86. doi: 10.1186/s12885-023-10550-w.