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拨动开关残基通过参与蛋白核心的协同重排来控制细菌黏附素的别构转变。

Toggle switch residues control allosteric transitions in bacterial adhesins by participating in a concerted repacking of the protein core.

机构信息

Department of Microbiology, University of Washington, Seattle, Washington, United States of America.

Department of Biochemistry, University of Washington, Seattle, Washington, United States of America.

出版信息

PLoS Pathog. 2021 Apr 7;17(4):e1009440. doi: 10.1371/journal.ppat.1009440. eCollection 2021 Apr.

Abstract

Critical molecular events that control conformational transitions in most allosteric proteins are ill-defined. The mannose-specific FimH protein of Escherichia coli is a prototypic bacterial adhesin that switches from an 'inactive' low-affinity state (LAS) to an 'active' high-affinity state (HAS) conformation allosterically upon mannose binding and mediates shear-dependent catch bond adhesion. Here we identify a novel type of antibody that acts as a kinetic trap and prevents the transition between conformations in both directions. Disruption of the allosteric transitions significantly slows FimH's ability to associate with mannose and blocks bacterial adhesion under dynamic conditions. FimH residues critical for antibody binding form a compact epitope that is located away from the mannose-binding pocket and is structurally conserved in both states. A larger antibody-FimH contact area is identified by NMR and contains residues Leu-34 and Val-35 that move between core-buried and surface-exposed orientations in opposing directions during the transition. Replacement of Leu-34 with a charged glutamic acid stabilizes FimH in the LAS conformation and replacement of Val-35 with glutamic acid traps FimH in the HAS conformation. The antibody is unable to trap the conformations if Leu-34 and Val-35 are replaced with a less bulky alanine. We propose that these residues act as molecular toggle switches and that the bound antibody imposes a steric block to their reorientation in either direction, thereby restricting concerted repacking of side chains that must occur to enable the conformational transition. Residues homologous to the FimH toggle switches are highly conserved across a diverse family of fimbrial adhesins. Replacement of predicted switch residues reveals that another E. coli adhesin, galactose-specific FmlH, is allosteric and can shift from an inactive to an active state. Our study shows that allosteric transitions in bacterial adhesins depend on toggle switch residues and that an antibody that blocks the switch effectively disables adhesive protein function.

摘要

控制大多数别构蛋白构象转变的关键分子事件尚不清楚。大肠杆菌的甘露糖特异性 FimH 蛋白是一种典型的细菌黏附素,它在结合甘露糖时通过别构作用从“无活性”低亲和力状态(LAS)切换到“活性”高亲和力状态(HAS)构象,并介导剪切依赖性捕获键黏附。在这里,我们鉴定了一种新型抗体,它作为一种动力学陷阱,阻止了两种构象之间的转变。别构转变的中断显著降低了 FimH 与甘露糖结合的能力,并在动态条件下阻止了细菌的黏附。对于抗体结合至关重要的 FimH 残基形成一个紧凑的表位,该表位远离甘露糖结合口袋,并且在两种状态下结构上是保守的。NMR 鉴定出一个更大的抗体-FimH 接触面积,其中包含残基 Leu-34 和 Val-35,它们在转变过程中在核心埋藏和表面暴露取向之间来回移动。用带电荷的谷氨酸替换 Leu-34 可使 FimH 稳定在 LAS 构象中,用谷氨酸替换 Val-35 可使 FimH 稳定在 HAS 构象中。如果用体积较小的丙氨酸替换 Leu-34 和 Val-35,则抗体无法捕获这些构象。我们提出这些残基作为分子toggle 开关,并且结合的抗体对它们在任何方向上的重排施加空间位阻,从而限制了必需的协同重排,以实现构象转变。在各种纤毛黏附素家族中,FimH toggle 开关的同源残基高度保守。预测的开关残基的替换表明,另一种大肠杆菌黏附素,半乳糖特异性 FmlH,是别构的,并且可以从不活跃状态转变为活跃状态。我们的研究表明,细菌黏附素的别构转变依赖于 toggle 开关残基,并且阻断开关的抗体可有效使黏附蛋白失活。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1f99/8064603/9fc871131e8b/ppat.1009440.g001.jpg

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