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外显子组测序鉴定多发性家系中与妥瑞氏症相关的基因。

Whole-exome sequencing identifies genes associated with Tourette's disorder in multiplex families.

机构信息

Department of Genetics, Rutgers, The State University of New Jersey, Piscataway, NJ, USA.

Human Genetic Institute of New Jersey, Rutgers, The State University of New Jersey, Piscataway, NJ, USA.

出版信息

Mol Psychiatry. 2021 Nov;26(11):6937-6951. doi: 10.1038/s41380-021-01094-1. Epub 2021 Apr 9.

DOI:10.1038/s41380-021-01094-1
PMID:33837273
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8501157/
Abstract

Tourette's Disorder (TD) is a neurodevelopmental disorder (NDD) that affects about 0.7% of the population and is one of the most heritable NDDs. Nevertheless, because of its polygenic nature and genetic heterogeneity, the genetic etiology of TD is not well understood. In this study, we combined the segregation information in 13 TD multiplex families with high-throughput sequencing and genotyping to identify genes associated with TD. Using whole-exome sequencing and genotyping array data, we identified both small and large genetic variants within the individuals. We then combined multiple types of evidence to prioritize candidate genes for TD, including variant segregation pattern, variant function prediction, candidate gene expression, protein-protein interaction network, candidate genes from previous studies, etc. From the 13 families, 71 strong candidate genes were identified, including both known genes for NDDs and novel genes, such as HtrA Serine Peptidase 3 (HTRA3), Cadherin-Related Family Member 1 (CDHR1), and Zinc Finger DHHC-Type Palmitoyltransferase 17 (ZDHHC17). The candidate genes are enriched in several Gene Ontology categories, such as dynein complex and synaptic membrane. Candidate genes and pathways identified in this study provide biological insight into TD etiology and potential targets for future studies.

摘要

妥瑞氏症(TD)是一种神经发育障碍(NDD),影响约 0.7%的人口,是最具遗传性的 NDD 之一。然而,由于其多基因性质和遗传异质性,TD 的遗传病因尚不清楚。在这项研究中,我们结合了 13 个 TD 多基因家族的分离信息,以及高通量测序和基因分型,以鉴定与 TD 相关的基因。我们使用全外显子测序和基因分型阵列数据,在个体内鉴定了小型和大型遗传变异。然后,我们结合多种证据,对 TD 的候选基因进行优先级排序,包括变异分离模式、变异功能预测、候选基因表达、蛋白质-蛋白质相互作用网络、先前研究中的候选基因等。从 13 个家族中,确定了 71 个强候选基因,包括 NDD 的已知基因和新基因,如 HTRA3、CDHR1 和 ZDHHC17。候选基因富集在几个基因本体论类别中,如动力蛋白复合物和突触膜。本研究中鉴定的候选基因和途径为 TD 的发病机制提供了生物学见解,并为未来的研究提供了潜在的靶点。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2214/8501157/9f9271c2f068/nihms-1689283-f0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2214/8501157/08b2ce3c321c/nihms-1689283-f0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2214/8501157/1b3bccdf2fd6/nihms-1689283-f0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2214/8501157/9f9271c2f068/nihms-1689283-f0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2214/8501157/08b2ce3c321c/nihms-1689283-f0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2214/8501157/1b3bccdf2fd6/nihms-1689283-f0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2214/8501157/9f9271c2f068/nihms-1689283-f0003.jpg

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