Dai Jiacheng, Chen Yu, Dai Rujia, Jiang Yi, Tian Jianghua, Liu Sihan, Xu Meng, Li Miao, Zhou Jiaqi, Liu Chunyu, Chen Chao
Center for Medical Genetics, Department of Psychiatry, School of Life Sciences, National Clinical Research Center on Mental Disorders, The Second Xiangya Hospital, Central South University, Changsha, China.
State Key Laboratory of Genetic Engineering, Human Phenome Institute, and School of Life Sciences, Fudan University, Shanghai, China.
Front Neurosci. 2021 Mar 25;15:614142. doi: 10.3389/fnins.2021.614142. eCollection 2021.
Agonal factors, the conditions that occur just prior to death, can impact the molecular quality of postmortem brains, influencing gene expression results. Our study used gene expression data of 262 samples from ROSMAP with the detailed terminal state recorded for each donor, such as fever, infection, and unconsciousness. Fever and infection were the primary contributors to brain gene expression changes, brain cell-type-specific gene expression, and cell proportion changes. Furthermore, we also found that previous studies of gene expression in postmortem brains were confounded by agonal factors. Therefore, correction for agonal factors is important in the step of data preprocessing. Our analyses revealed fever and infection contributing to gene expression changes in postmortem brains and emphasized the necessity of study designs that document and account for agonal factors.
濒死因素,即死亡前出现的状况,会影响死后大脑的分子质量,进而影响基因表达结果。我们的研究使用了来自ROSMAP的262个样本的基因表达数据,每个供体都记录了详细的终末状态,如发热、感染和昏迷。发热和感染是大脑基因表达变化、脑细胞类型特异性基因表达以及细胞比例变化的主要促成因素。此外,我们还发现先前关于死后大脑基因表达的研究受到濒死因素的混淆。因此,在数据预处理步骤中校正濒死因素很重要。我们的分析揭示了发热和感染导致死后大脑中的基因表达变化,并强调了记录和考虑濒死因素的研究设计的必要性。