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基于重组酶聚合酶扩增联合光致敏比色测定法的快速检测 spp.。

Recombinase Polymerase Amplification Coupled with a Photosensitization Colorimetric Assay for Fast spp. Testing.

机构信息

State Key Laboratory of Hydraulics and Mountain River Engineering, Analytical & Testing Center, Sichuan University, Chengdu 610064, China.

College of Chemistry, Sichuan University, Chengdu 610064, China.

出版信息

Anal Chem. 2021 Apr 27;93(16):6559-6566. doi: 10.1021/acs.analchem.1c00791. Epub 2021 Apr 14.

Abstract

spp. is one of the most serious foodborne pathogens causing millions of infection cases annually, especially in resource-limited areas. The standard culture method (2-3 days) and current nucleic acid amplification-based testing are not suitable for on-site testing in rural areas with heavy spp. burden. Here, we developed a colorimetric recombinase polymerase amplification (RPA) method for fast and sensitive spp. testing in 1 h. Specifically, the invA gene from the genomic DNA of spp. was amplified isothermally to produce double-stranded DNA (dsDNA) amplicons, which were directly quantified by a photosensitization colorimetric assay. The proposed method offered the lowest detectable concentration of 5 × 10 colony-forming units/mL (cfu/mL), which is much lower than that of ELISA (10-10 cfu/mL). The detectable limit could be further pushed down to 3 cfu/mL upon coupling with bacteria pre-enrichment for 6 h. Analysis of synthetic milk samples confirmed the high precision (90%) and specificity (95%) of the method for spp. testing. Moreover, use of a DNA releaser could further simplify the whole testing operation. Because RPA features low-temperature amplification (25-42 °C) without the need for specific instruments and the dsDNA-based photosensitization colorimetric assay served as a simple and facile readout for RPA, our method thus allows fast and low-cost spp. testing in food samples.

摘要

spp. 是食源性致病菌之一,每年可导致数百万人感染,尤其是在资源有限的地区。标准培养方法(2-3 天)和当前基于核酸扩增的检测方法并不适合在 spp. 负担沉重的农村地区进行现场检测。在这里,我们开发了一种用于快速灵敏检测 spp. 的比色重组聚合酶扩增(RPA)方法,可在 1 小时内完成。具体来说,从 spp. 的基因组 DNA 中扩增 invA 基因,以产生双链 DNA(dsDNA)扩增子,然后直接通过光敏比色测定进行定量。该方法的最低检测浓度为 5×10 菌落形成单位/mL(cfu/mL),比 ELISA(10-10 cfu/mL)低得多。通过与细菌预富集 6 小时结合,检测限可进一步降低至 3 cfu/mL。对合成牛奶样品的分析证实了该方法对 spp. 检测具有高精确度(90%)和特异性(95%)。此外,使用 DNA 释放剂可以进一步简化整个检测操作。由于 RPA 具有低温扩增(25-42°C)的特点,无需特定仪器,并且 dsDNA 基光敏比色测定作为 RPA 的简单易行的读出方式,因此我们的方法可用于快速低成本地检测食品样品中的 spp.。

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