• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

通过单配子测序实现个性化基因组结构。

Personalized genome structure via single gamete sequencing.

机构信息

Bioinformatics and Cellular Genomics, St. Vincent's Institute of Medical Research, Melbourne, Australia.

Melbourne Integrative Genomics, Faculty of Science, The University of Melbourne, Melbourne, Australia.

出版信息

Genome Biol. 2021 Apr 19;22(1):112. doi: 10.1186/s13059-021-02327-w.

DOI:10.1186/s13059-021-02327-w
PMID:33874978
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8054432/
Abstract

Genetic maps have been fundamental to building our understanding of disease genetics and evolutionary processes. The gametes of an individual contain all of the information required to perform a de novo chromosome-scale assembly of an individual's genome, which historically has been performed with populations and pedigrees. Here, we discuss how single-cell gamete sequencing offers the potential to merge the advantages of short-read sequencing with the ability to build personalized genetic maps and open up an entirely new space in personalized genetics.

摘要

遗传图谱对于构建我们对疾病遗传学和进化过程的理解至关重要。个体的配子包含了从头进行个体基因组的染色体级别的组装所需的全部信息,而这在历史上是通过群体和家系来完成的。在这里,我们讨论了单细胞配子测序如何结合短读测序的优势,以及构建个性化遗传图谱的能力,从而为个性化遗传学开辟一个全新的领域。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fcb7/8054432/9093c07777b6/13059_2021_2327_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fcb7/8054432/decf790a965f/13059_2021_2327_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fcb7/8054432/103e91a3bad8/13059_2021_2327_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fcb7/8054432/dc0dcfa33d68/13059_2021_2327_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fcb7/8054432/9093c07777b6/13059_2021_2327_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fcb7/8054432/decf790a965f/13059_2021_2327_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fcb7/8054432/103e91a3bad8/13059_2021_2327_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fcb7/8054432/dc0dcfa33d68/13059_2021_2327_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fcb7/8054432/9093c07777b6/13059_2021_2327_Fig4_HTML.jpg

相似文献

1
Personalized genome structure via single gamete sequencing.通过单配子测序实现个性化基因组结构。
Genome Biol. 2021 Apr 19;22(1):112. doi: 10.1186/s13059-021-02327-w.
2
Single-cell sequencing techniques from individual to multiomics analyses.单细胞测序技术:从单组学到多组学分析。
Exp Mol Med. 2020 Sep;52(9):1419-1427. doi: 10.1038/s12276-020-00499-2. Epub 2020 Sep 15.
3
Precision oncology using a limited number of cells: optimization of whole genome amplification products for sequencing applications.使用有限数量细胞的精准肿瘤学:用于测序应用的全基因组扩增产物的优化
BMC Cancer. 2017 Jul 1;17(1):457. doi: 10.1186/s12885-017-3447-6.
4
Gamete binning: chromosome-level and haplotype-resolved genome assembly enabled by high-throughput single-cell sequencing of gamete genomes.配子-bin 分析:通过高通量单细胞配子基因组测序实现染色体水平和单倍型分辨率的基因组组装。
Genome Biol. 2020 Dec 29;21(1):306. doi: 10.1186/s13059-020-02235-5.
5
Construction of Whole Genomes from Scaffolds Using Single Cell Strand-Seq Data.使用单细胞链测序数据从支架构建全基因组。
Int J Mol Sci. 2021 Mar 31;22(7):3617. doi: 10.3390/ijms22073617.
6
Translating personalized genomic medicine into clinical practice: evidence, values, and health policy.将个性化基因组医学转化为临床实践:证据、价值观与卫生政策。
Genome. 2015 Dec;58(12):491-7. doi: 10.1139/gen-2015-0145. Epub 2015 Nov 18.
7
Short and long-read genome sequencing methodologies for somatic variant detection; genomic analysis of a patient with diffuse large B-cell lymphoma.短读长读基因组测序方法用于体细胞变异检测;弥漫性大 B 细胞淋巴瘤患者的基因组分析。
Sci Rep. 2021 Mar 19;11(1):6408. doi: 10.1038/s41598-021-85354-8.
8
Immunoinformatics and epitope prediction in the age of genomic medicine.基因组医学时代的免疫信息学与表位预测
Genome Med. 2015 Nov 20;7:119. doi: 10.1186/s13073-015-0245-0.
9
Long-read human genome sequencing and its applications.长读长基因组测序及其应用。
Nat Rev Genet. 2020 Oct;21(10):597-614. doi: 10.1038/s41576-020-0236-x. Epub 2020 Jun 5.
10
Single cell sequencing approaches for complex biological systems.用于复杂生物系统的单细胞测序方法。
Curr Opin Genet Dev. 2014 Jun;26:59-65. doi: 10.1016/j.gde.2014.06.004. Epub 2014 Jul 10.

引用本文的文献

1
Haplotype-resolved assembly of a pig genome using single-sperm sequencing.利用单精子测序对猪基因组进行单体型解析组装。
Commun Biol. 2024 Jun 18;7(1):738. doi: 10.1038/s42003-024-06397-x.
2
HLA Genetics for the Human Diseases.人类疾病的 HLA 遗传学。
Adv Exp Med Biol. 2024;1444:237-258. doi: 10.1007/978-981-99-9781-7_16.
3
Long-read-based single sperm genome sequencing for chromosome-wide haplotype phasing of both SNPs and SVs.基于长读长测序的单精子基因组测序技术,可对 SNP 和 SV 进行全染色体范围的单倍型相位分析。

本文引用的文献

1
Towards complete and error-free genome assemblies of all vertebrate species.致力于完成所有脊椎动物物种的完整且无错误的基因组组装。
Nature. 2021 Apr;592(7856):737-746. doi: 10.1038/s41586-021-03451-0. Epub 2021 Apr 28.
2
Gamete binning: chromosome-level and haplotype-resolved genome assembly enabled by high-throughput single-cell sequencing of gamete genomes.配子-bin 分析:通过高通量单细胞配子基因组测序实现染色体水平和单倍型分辨率的基因组组装。
Genome Biol. 2020 Dec 29;21(1):306. doi: 10.1186/s13059-020-02235-5.
3
Fully phased human genome assembly without parental data using single-cell strand sequencing and long reads.
Nucleic Acids Res. 2023 Aug 25;51(15):8020-8034. doi: 10.1093/nar/gkad532.
4
Biomaterials for Testicular Bioengineering: How far have we come and where do we have to go?睾丸生物工程用生物材料:我们已经走了多远,还有多远要走?
Front Endocrinol (Lausanne). 2023 Mar 16;14:1085872. doi: 10.3389/fendo.2023.1085872. eCollection 2023.
5
A method for low-coverage single-gamete sequence analysis demonstrates adherence to Mendel's first law across a large sample of human sperm.一种低覆盖度单配子序列分析方法在大量人类精子样本中证明了符合孟德尔第一定律。
Elife. 2022 Dec 7;11:e76383. doi: 10.7554/eLife.76383.
6
SSNIP-seq: A simple and rapid method for isolation of single-sperm nucleic acid for high-throughput sequencing.SSNIP-seq:一种用于高通量测序中单精子核酸分离的简单快速方法。
PLoS One. 2022 Sep 29;17(9):e0275168. doi: 10.1371/journal.pone.0275168. eCollection 2022.
7
sgcocaller and comapr: personalised haplotype assembly and comparative crossover map analysis using single-gamete sequencing data.sgcocaller 和 comapr:使用单配子测序数据进行个性化单倍型组装和比较交叉图谱分析。
Nucleic Acids Res. 2022 Nov 11;50(20):e118. doi: 10.1093/nar/gkac764.
8
Analyzing Modern Biomolecules: The Revolution of Nucleic-Acid Sequencing - Review.分析现代生物分子:核酸测序的革命——综述。
Biomolecules. 2021 Jul 28;11(8):1111. doi: 10.3390/biom11081111.
利用单细胞测序和长读长技术进行全相基因组组装,无需父母数据。
Nat Biotechnol. 2021 Mar;39(3):302-308. doi: 10.1038/s41587-020-0719-5. Epub 2020 Dec 7.
4
Chromosome-scale, haplotype-resolved assembly of human genomes.人类基因组的染色体规模、单倍型解析组装。
Nat Biotechnol. 2021 Mar;39(3):309-312. doi: 10.1038/s41587-020-0711-0. Epub 2020 Dec 7.
5
Haplotype threading: accurate polyploid phasing from long reads.单体型连接:长读长准确进行多倍体相位分析。
Genome Biol. 2020 Sep 21;21(1):252. doi: 10.1186/s13059-020-02158-1.
6
Telomere-to-telomere assembly of a complete human X chromosome.端粒到端粒组装完整的人类 X 染色体。
Nature. 2020 Sep;585(7823):79-84. doi: 10.1038/s41586-020-2547-7. Epub 2020 Jul 14.
7
Solo: Doublet Identification in Single-Cell RNA-Seq via Semi-Supervised Deep Learning.单细胞 RNA-Seq 中的对偶识别:基于半监督深度学习的方法
Cell Syst. 2020 Jul 22;11(1):95-101.e5. doi: 10.1016/j.cels.2020.05.010. Epub 2020 Jun 26.
8
Insights into variation in meiosis from 31,228 human sperm genomes.从 31228 个人类精子基因组中洞察减数分裂的变异。
Nature. 2020 Jul;583(7815):259-264. doi: 10.1038/s41586-020-2347-0. Epub 2020 Jun 3.
9
Opportunities and challenges in long-read sequencing data analysis.长读测序数据分析中的机遇与挑战。
Genome Biol. 2020 Feb 7;21(1):30. doi: 10.1186/s13059-020-1935-5.
10
Structural variant calling: the long and the short of it.结构变异 calling:长与短。
Genome Biol. 2019 Nov 20;20(1):246. doi: 10.1186/s13059-019-1828-7.