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描述了从鱼类物种牙鲆(韩国斑点牙鲆)和翘嘴红鲌(豹纹狗鱼)肠道中分离到的新物种诺卡氏菌属鱼亚种、鱼生单胞菌属新种和中华新单胞菌属新种。

Description of Nocardioides piscis sp. nov., Sphingomonas piscis sp. nov. and Sphingomonas sinipercae sp. nov., isolated from the intestine of fish species Odontobutis interrupta (Korean spotted sleeper) and Siniperca scherzeri (leopard mandarin fish).

机构信息

Department of Biology and Department of Biomedical and Pharmaceutical Sciences, Kyung Hee University, Seoul, 02447, Republic of Korea.

出版信息

J Microbiol. 2021 Jun;59(6):552-562. doi: 10.1007/s12275-021-1036-5. Epub 2021 Apr 20.

Abstract

A polyphasic taxonomic approach was used to characterize three novel bacterial strains, designated as HDW12A, HDW-15B, and HDW15C, isolated from the intestine of fish species Odontobutis interrupta or Siniperca scherzeri. All isolates were obligate aerobic, non-motile bacteria, and grew optimally at 30°C. Phylogenetic analysis based on 16S rRNA sequences revealed that strain HDW12A was a member of the genus Nocardioides, and closely related to Nocardioides allogilvus CFH 30205 (98.9% sequence identities). Furthermore, strains HDW15B and HDW15C were members of the genus Sphingomonas, and closely related to Sphingomonas lutea JS5 and Sphingomonas sediminicola Dae 20 (97.1% and 97.9% sequence identities), respectively. Strain HDW12A contained MK-8 (H), and strains HDW15B and HDW15C contained Q-10 as the respiratory quinone. Major polar lipid components of strain HDW12A were diphosphatidylglycerol, phosphatidylglycerol, and phosphatidylinositol, and those of strains HDW15B and HDW15C were sphingoglycolipid, diphosphatidylglycerol, phosphatidylglycerol, phosphatidylethanolamine, and phosphatidylcholine. The G + C content of strains HDW12A, HDW15B, and HDW15C were 69.7, 63.3, and 65.5%, respectively. The results of phylogenetic, phenotypic, chemotaxonomic, and genotypic analyses suggest that strain HDW12A represents a novel species within the genus Nocardioides, and strains HDW15B and HDW15C represent two novel species within the genus Sphingomonas. We propose the names Nocardioides piscis for strain HDW12A (= KACC 21336 = KCTC 49321 = JCM 33670), Sphingomonas piscis for strain HDW15B (= KACC 21341 = KCTC 72588 = JCM 33738), and Sphingomonas sinipercae for strain HDW15C (= KACC 21342 = KCTC 72589 = JCM 33739).

摘要

采用多相分类法对从鱼类 Odontobutis interrupta 或 Siniperca scherzeri 的肠道中分离到的三株新型细菌菌株 HDW12A、HDW-15B 和 HDW15C 进行了表征。所有分离株均为需氧、非运动细菌,最佳生长温度为 30°C。基于 16S rRNA 序列的系统发育分析表明,菌株 HDW12A 是 Nocardioides 属的成员,与 Nocardioides allogilvus CFH 30205(98.9%序列同一性)密切相关。此外,菌株 HDW15B 和 HDW15C 是 Sphingomonas 属的成员,与 Sphingomonas lutea JS5 和 Sphingomonas sediminicola Dae 20(97.1%和 97.9%序列同一性)密切相关。菌株 HDW12A 含有 MK-8(H),而菌株 HDW15B 和 HDW15C 含有 Q-10 作为呼吸醌。菌株 HDW12A 的主要极性脂成分为双磷脂酰甘油、磷脂酰甘油和磷脂酰肌醇,而菌株 HDW15B 和 HDW15C 的主要极性脂成分为神经酰胺糖脂、双磷脂酰甘油、磷脂酰甘油、磷脂酰乙醇胺和磷脂酰胆碱。菌株 HDW12A、HDW15B 和 HDW15C 的 G+C 含量分别为 69.7%、63.3%和 65.5%。基于系统发育、表型、化学分类和基因型分析的结果表明,菌株 HDW12A 代表 Nocardioides 属中的一个新种,而菌株 HDW15B 和 HDW15C 代表 Sphingomonas 属中的两个新种。我们提议将菌株 HDW12A 命名为 Nocardioides piscis(=KACC 21336=KCTC 49321=JCM 33670),将菌株 HDW15B 命名为 Sphingomonas piscis(=KACC 21341=KCTC 72588=JCM 33738),将菌株 HDW15C 命名为 Sphingomonas sinipercae(=KACC 21342=KCTC 72589=JCM 33739)。

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