Department of Epidemiology, Shanxi Medical University School of Public Health, Taiyuan, Shanxi 030001, PR China.
Research Units of Discovery of Unknown Bacteria and Function, Chinese Academy of Medical Sciences, Beijing 100730, PR China.
Int J Syst Evol Microbiol. 2020 Jun;70(6):3665-3672. doi: 10.1099/ijsem.0.004218.
Two novel Gram-stain-positive, irregular rod-shaped bacterial strains, dk3136 and dk3543, were isolated from the faeces of Tibetan gazelle () in the Qinghai-Tibet Plateau of PR China. The cells were aerobic, oxidase-negative and catalase-positive. Colonies were yellowish, circular without any observable aerial mycelium after culturing at 28 ℃ for 3 days on brain-heart infusion (BHI) agar with 5 % sheep blood. The cells grew optimally at 28 °C, pH 7.5 and with 1 % (w/v) NaCl on BHI agar supplemented with 5 % sheep blood. Phylogenetic analysis of the 16S rRNA gene sequences revealed that their nearest phylogenetic relative was Ka25 (97.9 % similarity). The results of 16S rRNA gene sequence and phylogenetic/phylogenomic analyses illustrated that Ka25, XZ17, 78 and D287 were their nearest phylogenetic neighbours. The DNA G+C contents of strains dk3136 and dk3543 were 70.3 mol% and 70.4 mol%, respectively. Their genomes exhibit lower than threshold (95-96 %) average nucleotide identity to known species of the genus . ll-2,6-diaminopimelic acid was the diagnostic diamino acid and MK-8(H) was the predominant respiratory quinone. The major polar lipids were diphosphatidylglycerol and phosphatidylglycerol. The two strains had C 9, -C and C 8 as the major fatty acids, and rhamnose and galactose as the main whole-cell sugars. On the basis of the results of our genotypic, phenotypic and biochemical analyses, we conclude that strains dk3136 and dk3543 represent a novel species in genus , for which the name sp. nov. is proposed. The type strain is dk3136 (=CGMCC 4.7570=JCM 33496=KCTC 49314).
两株新型革兰氏阳性、不规则杆状细菌菌株,dk3136 和 dk3543,从中国青藏高原藏羚羊的粪便中分离得到。细胞为需氧、氧化酶阴性、过氧化氢酶阳性。在添加了 5%绵羊血的脑心浸液(BHI)琼脂上于 28℃培养 3 天后,菌落呈黄色、圆形,无可见气生菌丝。细胞在 28℃、pH7.5 和添加了 5%绵羊血的 BHI 琼脂中生长最佳,添加 1%(w/v)NaCl。16S rRNA 基因序列的系统发育分析表明,其最近的系统发育同源物为 Ka25(相似度为 97.9%)。16S rRNA 基因序列和系统发育/系统基因组分析的结果表明,Ka25、XZ17、78 和 D287 是它们最近的系统发育邻居。菌株 dk3136 和 dk3543 的 DNA G+C 含量分别为 70.3mol%和 70.4mol%。它们的基因组与属内已知种的平均核苷酸同一性低于阈值(95-96%)。二氨基庚二酸是诊断性二氨基庚二酸,MK-8(H)是主要的呼吸醌。主要极性脂为双磷脂酰甘油和磷脂酰甘油。两种菌株的主要脂肪酸为 C9、-C 和 C8,主要的全细胞糖为鼠李糖和半乳糖。基于基因型、表型和生化分析的结果,我们认为菌株 dk3136 和 dk3543 代表了一个属内的新种,建议命名为 sp. nov. 。模式菌株为 dk3136(=CGMCC 4.7570=JCM 33496=KCTC 49314)。