• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

具有环的网络的置信传播。

Belief propagation for networks with loops.

作者信息

Kirkley Alec, Cantwell George T, Newman M E J

机构信息

Department of Physics, University of Michigan, Ann Arbor, MI 48109, USA.

Santa Fe Institute, 1399 Hyde Park Road, Santa Fe, NM 87501, USA.

出版信息

Sci Adv. 2021 Apr 23;7(17). doi: 10.1126/sciadv.abf1211. Print 2021 Apr.

DOI:10.1126/sciadv.abf1211
PMID:33893102
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11426199/
Abstract

Belief propagation is a widely used message passing method for the solution of probabilistic models on networks such as epidemic models, spin models, and Bayesian graphical models, but it suffers from the serious shortcoming that it works poorly in the common case of networks that contain short loops. Here, we provide a solution to this long-standing problem, deriving a belief propagation method that allows for fast calculation of probability distributions in systems with short loops, potentially with high density, as well as giving expressions for the entropy and partition function, which are notoriously difficult quantities to compute. Using the Ising model as an example, we show that our approach gives excellent results on both real and synthetic networks, improving substantially on standard message passing methods. We also discuss potential applications of our method to a variety of other problems.

摘要

信念传播是一种广泛应用的消息传递方法,用于求解诸如流行病模型、自旋模型和贝叶斯图形模型等网络上的概率模型,但它存在一个严重的缺点,即在包含短环的网络这种常见情况下效果不佳。在此,我们为这个长期存在的问题提供了一个解决方案,推导了一种信念传播方法,该方法能够在具有短环(可能具有高密度)的系统中快速计算概率分布,同时还给出了熵和配分函数的表达式,而这些量的计算一直是非常困难的。以伊辛模型为例,我们表明我们的方法在真实网络和合成网络上都能给出优异的结果,相比标准的消息传递方法有显著改进。我们还讨论了我们的方法在各种其他问题上的潜在应用。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2055/11426199/f719ea45cb42/abf1211-f3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2055/11426199/0ea4c15229cd/abf1211-f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2055/11426199/2a14d21519e3/abf1211-f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2055/11426199/f719ea45cb42/abf1211-f3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2055/11426199/0ea4c15229cd/abf1211-f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2055/11426199/2a14d21519e3/abf1211-f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2055/11426199/f719ea45cb42/abf1211-f3.jpg

相似文献

1
Belief propagation for networks with loops.具有环的网络的置信传播。
Sci Adv. 2021 Apr 23;7(17). doi: 10.1126/sciadv.abf1211. Print 2021 Apr.
2
Message passing on networks with loops.带环的网络上的消息传递。
Proc Natl Acad Sci U S A. 2019 Nov 19;116(47):23398-23403. doi: 10.1073/pnas.1914893116. Epub 2019 Nov 4.
3
Tensor Network Message Passing.张量网络消息传递
Phys Rev Lett. 2024 Mar 15;132(11):117401. doi: 10.1103/PhysRevLett.132.117401.
4
Counting the number of solutions in satisfiability problems with tensor-network message passing.使用张量网络消息传递计算可满足性问题中的解的数量。
Phys Rev E. 2024 Sep;110(3-1):034126. doi: 10.1103/PhysRevE.110.034126.
5
Belief-propagation algorithm and the Ising model on networks with arbitrary distributions of motifs.具有任意基序分布的网络上的置信传播算法与伊辛模型。
Phys Rev E Stat Nonlin Soft Matter Phys. 2011 Oct;84(4 Pt 1):041144. doi: 10.1103/PhysRevE.84.041144. Epub 2011 Oct 31.
6
The graphical brain: Belief propagation and active inference.图形大脑:信念传播与主动推理。
Netw Neurosci. 2017;1(4):381-414. doi: 10.1162/NETN_a_00018. Epub 2017 Dec 31.
7
Correctness of belief propagation in Gaussian graphical models of arbitrary topology.任意拓扑结构高斯图形模型中信念传播的正确性。
Neural Comput. 2001 Oct;13(10):2173-200. doi: 10.1162/089976601750541769.
8
Neuronal message passing using Mean-field, Bethe, and Marginal approximations.使用平均场、Bethe 和边缘近似进行神经元信息传递。
Sci Rep. 2019 Feb 13;9(1):1889. doi: 10.1038/s41598-018-38246-3.
9
Correctness of local probability in graphical models with loops.含环图模型中局部概率的正确性
Neural Comput. 2000 Jan;12(1):1-41. doi: 10.1162/089976600300015880.
10
Factorization in molecular modeling and belief propagation algorithms.分子建模与置信传播算法中的因式分解
Math Biosci Eng. 2023 Nov 27;20(12):21147-21162. doi: 10.3934/mbe.2023935.

引用本文的文献

1
Detailed-level modelling of influence spreading on complex networks.复杂网络上影响传播的详细层次建模。
Sci Rep. 2024 Nov 14;14(1):28069. doi: 10.1038/s41598-024-79182-9.
2
Unveiling hidden connections in omics data via pyPARAGON: an integrative hybrid approach for disease network construction.通过 pyPARAGON 揭示组学数据中的隐藏关联:一种用于疾病网络构建的综合混合方法。
Brief Bioinform. 2024 Jul 25;25(5). doi: 10.1093/bib/bbae399.
3
The dynamic resilience of urban labour networks.城市劳动力网络的动态韧性

本文引用的文献

1
Message passing on networks with loops.带环的网络上的消息传递。
Proc Natl Acad Sci U S A. 2019 Nov 19;116(47):23398-23403. doi: 10.1073/pnas.1914893116. Epub 2019 Nov 4.
2
Localization and centrality in networks.网络中的定位与中心性
Phys Rev E Stat Nonlin Soft Matter Phys. 2014 Nov;90(5-1):052808. doi: 10.1103/PhysRevE.90.052808. Epub 2014 Nov 12.
3
Percolation on sparse networks.稀疏网络上的渗流。
R Soc Open Sci. 2023 Jul 5;10(7):230214. doi: 10.1098/rsos.230214. eCollection 2023 Jul.
Phys Rev Lett. 2014 Nov 14;113(20):208702. doi: 10.1103/PhysRevLett.113.208702. Epub 2014 Nov 12.
4
Spectral redemption in clustering sparse networks.聚类稀疏网络中的谱救赎。
Proc Natl Acad Sci U S A. 2013 Dec 24;110(52):20935-40. doi: 10.1073/pnas.1312486110. Epub 2013 Nov 25.
5
Asymptotic analysis of the stochastic block model for modular networks and its algorithmic applications.模块化网络随机块模型的渐近分析及其算法应用。
Phys Rev E Stat Nonlin Soft Matter Phys. 2011 Dec;84(6 Pt 2):066106. doi: 10.1103/PhysRevE.84.066106. Epub 2011 Dec 12.
6
Spectra of sparse regular graphs with loops.带环的稀疏正则图的谱
Phys Rev E Stat Nonlin Soft Matter Phys. 2011 Nov;84(5 Pt 2):055101. doi: 10.1103/PhysRevE.84.055101. Epub 2011 Nov 16.
7
Belief-propagation algorithm and the Ising model on networks with arbitrary distributions of motifs.具有任意基序分布的网络上的置信传播算法与伊辛模型。
Phys Rev E Stat Nonlin Soft Matter Phys. 2011 Oct;84(4 Pt 1):041144. doi: 10.1103/PhysRevE.84.041144. Epub 2011 Oct 31.
8
Direct-coupling analysis of residue coevolution captures native contacts across many protein families.残基共进化的直接耦联分析捕获了许多蛋白质家族中的天然接触。
Proc Natl Acad Sci U S A. 2011 Dec 6;108(49):E1293-301. doi: 10.1073/pnas.1111471108. Epub 2011 Nov 21.
9
Stochastic blockmodels and community structure in networks.网络中的随机块模型与社区结构
Phys Rev E Stat Nonlin Soft Matter Phys. 2011 Jan;83(1 Pt 2):016107. doi: 10.1103/PhysRevE.83.016107. Epub 2011 Jan 21.
10
Random graphs with clustering.具有聚类特性的随机图
Phys Rev Lett. 2009 Jul 31;103(5):058701. doi: 10.1103/PhysRevLett.103.058701. Epub 2009 Jul 27.