Research School of Chemistry, The Australian National University, Canberra, 2601, Australia.
Australian Research Council Centre of Excellence for Innovations in Peptide and Protein Science, Research School of Chemistry, Australian National University, Canberra, 2601, ACT, Australia.
Protein Eng Des Sel. 2021 Feb 15;34. doi: 10.1093/protein/gzab009.
Proteins are dynamic molecules whose structures consist of an ensemble of conformational states. Dynamics contribute to protein function and a link to protein evolution has begun to emerge. This increased appreciation for the evolutionary impact of conformational sampling has grown from our developing structural biology capabilities and the exploration of directed evolution approaches, which have allowed evolutionary trajectories to be mapped. Recent studies have provided empirical examples of how proteins can evolve via conformational landscape alterations. Moreover, minor conformational substates have been shown to be involved in the emergence of new enzyme functions as they can become enriched through evolution. The role of remote mutations in stabilizing new active site geometries has also granted insight into the molecular basis underpinning poorly understood epistatic effects that guide protein evolution. Finally, we discuss how the growth of our understanding of remote mutations is beginning to refine our approach to engineering enzymes.
蛋白质是动态分子,其结构由构象状态的集合组成。动力学有助于蛋白质的功能,并且蛋白质进化之间的联系已经开始显现。这种对构象采样进化影响的认识的提高,源自我们不断发展的结构生物学能力,以及对定向进化方法的探索,这些方法使我们能够描绘进化轨迹。最近的研究提供了蛋白质如何通过构象景观改变来进化的经验实例。此外,已经表明较小的构象亚稳态参与新酶功能的出现,因为它们可以通过进化而富集。远程突变在稳定新活性位点几何形状中的作用也为理解引导蛋白质进化的不良理解的上位效应的分子基础提供了深入的了解。最后,我们讨论了我们对远程突变的理解的不断提高如何开始完善我们设计酶的方法。