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分子技术在西尼罗河、登革热、寨卡和基孔肯雅热等虫媒病毒基因组 RNA 检测中的应用:叙述性综述。

Molecular techniques for the genomic viral RNA detection of West Nile, Dengue, Zika and Chikungunya arboviruses: a narrative review.

机构信息

Department of Infectious-Tropical Diseases and Microbiology, IRCCS Sacro Cuore Don Calabria Hospital, Verona, Italy.

Department of Diagnostics and Public Health, University of Verona, Verona, Italy.

出版信息

Expert Rev Mol Diagn. 2021 Jun;21(6):591-612. doi: 10.1080/14737159.2021.1924059. Epub 2021 Jun 8.

Abstract

: Molecular technology has played an important role in arboviruses diagnostics. PCR-based methods stand out in terms of sensitivity, specificity, cost, robustness, and accessibility, and especially the isothermal amplification (IA) method is ideal for field-adaptable diagnostics in resource-limited settings (RLS).: In this review, we provide an overview of the various molecular methods for West Nile, Zika, Dengue and Chikungunya. We summarize literature works reporting the assessment and use of in house and commercial assays. We describe limitations and challenges in the usage of methods and opportunities for novel approaches such as NNext-GenerationSequencing (NGS).: The rapidity and accuracy of differential diagnosis is essential for a successful clinical management, particularly in co-circulation area of arboviruses. Several commercial diagnostic molecular assays are available, but many are not affordable by RLS and not usable as Point-of-care/Point-of-need (POC/PON) such as RReal-TimeRT-PCR, Array-based methods and NGS. In contrast, the IA-based system fits better for POC/PON but it is still not ideal for the multiplexing detection system. Improvement in the characterization and validation of current molecular assays is needed to optimize their translation to the point of care.

摘要

分子技术在虫媒病毒诊断中发挥了重要作用。基于 PCR 的方法在灵敏度、特异性、成本、稳健性和可及性方面表现突出,特别是等温扩增 (IA) 方法非常适合资源有限环境 (RLS) 中现场适应的诊断。在这篇综述中,我们概述了西尼罗河病毒、寨卡病毒、登革热病毒和基孔肯雅热病毒的各种分子方法。我们总结了文献中关于内部和商业检测的评估和使用。我们描述了方法使用中的局限性和挑战,以及新方法(如下一代测序 (NGS))的机会。快速准确的鉴别诊断对于成功的临床管理至关重要,特别是在虫媒病毒的循环区域。有几种商业诊断性分子检测方法,但许多方法是资源有限的地区无法负担得起的,也不能作为即时检测/即时需求 (POC/PON) ,如实时 RT-PCR、基于阵列的方法和 NGS。相比之下,基于 IA 的系统更适合 POC/PON,但它仍然不适合多路复用检测系统。需要改进当前分子检测方法的特征描述和验证,以优化其向即时护理的转化。

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