Chatterjee Avishek, Nardi Cosimo, Oberije Cary, Lambin Philippe
The D-Lab, Department of Precision Medicine, GROW-School for Oncology, Maastricht University, 6229 ER Maastricht, The Netherlands.
Department of Experimental and Clinical Biomedical Sciences, University of Florence, 50134 Florence, Italy.
J Pers Med. 2021 Apr 14;11(4):300. doi: 10.3390/jpm11040300.
Searching through the COVID-19 research literature to gain actionable clinical insight is a formidable task, even for experts. The usefulness of this corpus in terms of improving patient care is tied to the ability to see the big picture that emerges when the studies are seen in conjunction rather than in isolation. When the answer to a search query requires linking together multiple pieces of information across documents, simple keyword searches are insufficient. To answer such complex information needs, an innovative artificial intelligence (AI) technology named a knowledge graph (KG) could prove to be effective.
We conducted an exploratory literature review of KG applications in the context of COVID-19. The search term used was "covid-19 knowledge graph". In addition to PubMed, the first five pages of search results for Google Scholar and Google were considered for inclusion. Google Scholar was used to include non-peer-reviewed or non-indexed articles such as pre-prints and conference proceedings. Google was used to identify companies or consortiums active in this domain that have not published any literature, peer-reviewed or otherwise.
Our search yielded 34 results on PubMed and 50 results each on Google and Google Scholar. We found KGs being used for facilitating literature search, drug repurposing, clinical trial mapping, and risk factor analysis.
Our synopses of these works make a compelling case for the utility of this nascent field of research.
即使对于专家而言,在新冠病毒(COVID-19)研究文献中进行检索以获得可行的临床见解也是一项艰巨的任务。就改善患者护理而言,该文献库的实用性取决于能否从整体上看待这些研究,而非孤立地看待。当搜索查询的答案需要将跨文档的多条信息联系在一起时,简单的关键词搜索是不够的。为了满足此类复杂的信息需求,一种名为知识图谱(KG) 的创新人工智能(AI)技术可能会被证明是有效的。
我们对知识图谱在新冠病毒背景下的应用进行了探索性文献综述。使用的搜索词是“covid-19知识图谱”。除了PubMed之外,还考虑纳入谷歌学术搜索和谷歌搜索结果的前五页。谷歌学术搜索用于纳入未经同行评审或未被索引的文章,如预印本和会议论文集。谷歌用于识别活跃于该领域但未发表任何同行评审或其他文献的公司或财团。
我们在PubMed上搜索到34条结果,在谷歌和谷歌学术搜索上各搜索到50条结果。我们发现知识图谱被用于促进文献检索、药物重新利用、临床试验映射和风险因素分析。
我们对这些研究的概述有力地证明了这个新兴研究领域的实用性。