Drgan Viktor, Bajželj Benjamin
Laboratory for Cheminformatics, Theory Department, National Institute of Chemistry, Hajdrihova 19, 1001 Ljubljana, Slovenia.
Biotechnical Faculty, University of Ljubljana, Jamnikarjeva 101, 1000 Ljubljana, Slovenia.
Int J Mol Sci. 2021 Apr 24;22(9):4443. doi: 10.3390/ijms22094443.
The hepatotoxic potential of drugs is one of the main reasons why a number of drugs never reach the market or have to be withdrawn from the market. Therefore, the evaluation of the hepatotoxic potential of drugs is an important part of the drug development process. The aim of this work was to evaluate the relative abilities of different supervised self-organizing algorithms in classifying the hepatotoxic potential of drugs. Two modifications of standard counter-propagation training algorithms were proposed to achieve good separation of clusters on the self-organizing map. A series of optimizations were performed using genetic algorithm to select models developed with counter-propagation neural networks, X-Y fused networks, and the two newly proposed algorithms. The cluster separations achieved by the different algorithms were evaluated using a simple measure presented in this paper. Both proposed algorithms showed a better formation of clusters compared to the standard counter-propagation algorithm. The X-Y fused neural network confirmed its high ability to form well-separated clusters. Nevertheless, one of the proposed algorithms came close to its clustering results, which also resulted in a similar number of selected models.
药物的肝毒性潜力是许多药物从未进入市场或不得不从市场上撤回的主要原因之一。因此,评估药物的肝毒性潜力是药物研发过程的重要组成部分。这项工作的目的是评估不同监督自组织算法在分类药物肝毒性潜力方面的相对能力。提出了标准反向传播训练算法的两种改进方法,以在自组织映射上实现聚类的良好分离。使用遗传算法进行了一系列优化,以选择由反向传播神经网络、X-Y融合网络和两种新提出的算法开发的模型。使用本文提出的一种简单度量方法评估了不同算法实现的聚类分离情况。与标准反向传播算法相比,两种新提出的算法都显示出更好的聚类形成效果。X-Y融合神经网络证实了其形成分离良好的聚类的高能力。然而,其中一种新提出的算法接近其聚类结果,这也导致了类似数量的选定模型。