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从三亚青梅港红树林根际土壤中分离得到的链霉菌 HSG2 的全基因组序列。

Complete genome sequence of Streptomyces sp. HSG2 from rhizosphere soil of mangrove in Qingmei Gang, Sanya.

机构信息

Key Laboratory of Marine Biogenetic Resources, Third Institute of Oceanography, Ministry of Natural Resources, Xiamen, 361005, Fujian, People's Republic of China.

出版信息

Arch Microbiol. 2021 Aug;203(6):3519-3524. doi: 10.1007/s00203-021-02339-x. Epub 2021 May 1.

Abstract

Streptomyces sp. HSG2 was isolated from rhizosphere soil of a mangrove forest sample at Qingmei Gang, Sanya. The complete genome sequence of the strain HSG2 was obtained using PacBio Sequel HGAP.4 and comprised of 5,282,528 base pairs with a 71.9 mol% G + C content, 4504 protein-coding genes, and 71 RNAs. An in-silico analysis confirmed that genes associated with polysaccharide hydrolyzation, hydrocarbon degradation, and aerobic denitrification were presented in the genome. We also identified 24 natural product biosynthetic gene clusters for secondary metabolites, including those for streptobactin and nystatin A1. The complete genome sequence indicated that Streptomyces sp. HSG2 will provide insight into the biosynthesis and regulatory mechanisms for its secondary metabolites, and propose a potential use in biotechnological and novel bioactive natural product biosynthetic applications.

摘要

从三亚青梅港红树林土壤中分离到一株链霉菌(Streptomyces sp.)HSG2。利用 PacBio Sequel HGAP.4 获得了该菌株 HSG2 的全基因组序列,该序列全长 5,282,528 个碱基,G+C 含量为 71.9%mol,包含 4504 个蛋白编码基因和 71 个 RNA。通过计算机分析证实,该基因组中存在与多糖水解、烃类降解和需氧反硝化相关的基因。我们还鉴定了 24 个天然产物生物合成基因簇,用于合成次生代谢产物,包括链霉素和制霉菌素 A1。完整的基因组序列表明,链霉菌(Streptomyces sp.)HSG2 将为其次生代谢物的生物合成和调控机制提供深入了解,并为生物技术和新型生物活性天然产物生物合成应用提供潜在用途。

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