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通过模型盲时空滤波恢复双光子钙成像数据

Restoration of Two-Photon Ca Imaging Data Through Model Blind Spatiotemporal Filtering.

作者信息

Luo Liyong, Xu Yuanxu, Pan Junxia, Wang Meng, Guan Jiangheng, Liang Shanshan, Li Yurong, Jia Hongbo, Chen Xiaowei, Li Xingyi, Zhang Chunqing, Liao Xiang

机构信息

Brain Research Center and State Key Laboratory of Trauma, Burns, and Combined Injury, Third Military Medical University, Chongqing, China.

Department of Patient Management, Fifth Medical Center, Chinese PLA General Hospital, Beijing, China.

出版信息

Front Neurosci. 2021 Apr 16;15:630250. doi: 10.3389/fnins.2021.630250. eCollection 2021.

Abstract

Two-photon Ca imaging is a leading technique for recording neuronal activities with cellular or subcellular resolution. However, during experiments, the images often suffer from corruption due to complex noises. Therefore, the analysis of Ca imaging data requires preprocessing steps, such as denoising, to extract biologically relevant information. We present an approach that facilitates imaging data restoration through image denoising performed by a neural network combining spatiotemporal filtering and model blind learning. Tests with synthetic and real two-photon Ca imaging datasets demonstrate that the proposed approach enables efficient restoration of imaging data. In addition, we demonstrate that the proposed approach outperforms the current state-of-the-art methods by evaluating the qualities of the denoising performance of the models quantitatively. Therefore, our method provides an invaluable tool for denoising two-photon Ca imaging data by model blind spatiotemporal processing.

摘要

双光子钙成像技术是一种以细胞或亚细胞分辨率记录神经元活动的前沿技术。然而,在实验过程中,由于复杂的噪声,图像常常会受到损坏。因此,钙成像数据分析需要进行预处理步骤,如去噪,以提取生物学相关信息。我们提出了一种方法,通过由结合时空滤波和模型盲学习的神经网络执行的图像去噪来促进成像数据恢复。对合成和真实双光子钙成像数据集的测试表明,所提出的方法能够有效地恢复成像数据。此外,通过定量评估模型去噪性能的质量,我们证明所提出的方法优于当前的先进方法。因此,我们的方法为通过模型盲时空处理对双光子钙成像数据进行去噪提供了一个宝贵的工具。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b545/8085276/96b1eaa6938d/fnins-15-630250-g001.jpg

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