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深入了解2-氧代酸脱氢酶复合物中蛋白质-蛋白质相互作用的结构和机制方面

Toward an Understanding of the Structural and Mechanistic Aspects of Protein-Protein Interactions in 2-Oxoacid Dehydrogenase Complexes.

作者信息

Nemeria Natalia S, Zhang Xu, Leandro Joao, Zhou Jieyu, Yang Luying, Houten Sander M, Jordan Frank

机构信息

Department of Chemistry, Rutgers, The State University of New Jersey, Newark, NJ 07102, USA.

Department of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA.

出版信息

Life (Basel). 2021 Apr 29;11(5):407. doi: 10.3390/life11050407.

DOI:10.3390/life11050407
PMID:33946784
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8146983/
Abstract

The 2-oxoglutarate dehydrogenase complex (OGDHc) is a key enzyme in the tricarboxylic acid (TCA) cycle and represents one of the major regulators of mitochondrial metabolism through NADH and reactive oxygen species levels. The OGDHc impacts cell metabolic and cell signaling pathways through the coupling of 2-oxoglutarate metabolism to gene transcription related to tumor cell proliferation and aging. is a gene encoding 2-oxoadipate dehydrogenase (E1a), which functions in the L-lysine degradation pathway. The potentially damaging variants in have been associated to the (neuro) pathogenesis of several diseases. Evidence was obtained for the formation of a hybrid complex between the OGDHc and E1a, suggesting a potential cross talk between the two metabolic pathways and raising fundamental questions about their assembly. Here we reviewed the recent findings and advances in understanding of protein-protein interactions in OGDHc and 2-oxoadipate dehydrogenase complex (OADHc), an understanding that will create a scaffold to help design approaches to mitigate the effects of diseases associated with dysfunction of the TCA cycle or lysine degradation. A combination of biochemical, biophysical and structural approaches such as chemical cross-linking MS and cryo-EM appears particularly promising to provide vital information for the assembly of 2-oxoacid dehydrogenase complexes, their function and regulation.

摘要

2-氧代戊二酸脱氢酶复合体(OGDHc)是三羧酸(TCA)循环中的关键酶,通过烟酰胺腺嘌呤二核苷酸(NADH)和活性氧水平代表线粒体代谢的主要调节因子之一。OGDHc通过将2-氧代戊二酸代谢与肿瘤细胞增殖和衰老相关的基因转录偶联,影响细胞代谢和细胞信号通路。 是一个编码2-氧代己二酸脱氢酶(E1a)的基因,其在L-赖氨酸降解途径中发挥作用。 中的潜在有害变异已与几种疾病的(神经)发病机制相关。已获得OGDHc和E1a之间形成杂合复合体的证据,表明这两条代谢途径之间可能存在相互作用,并引发了关于它们组装的基本问题。在这里,我们回顾了在理解OGDHc和2-氧代己二酸脱氢酶复合体(OADHc)中蛋白质-蛋白质相互作用方面的最新发现和进展,这种理解将创建一个框架,以帮助设计方法来减轻与TCA循环功能障碍或赖氨酸降解相关疾病的影响。生化、生物物理和结构方法的组合,如化学交联质谱和冷冻电镜,似乎特别有希望为2-氧代酸脱氢酶复合体的组装、功能和调节提供重要信息。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d39f/8146983/65869fa9827b/life-11-00407-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d39f/8146983/0f9f24b22326/life-11-00407-sch001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d39f/8146983/49d0cf803fa4/life-11-00407-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d39f/8146983/0abc19bb730a/life-11-00407-sch002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d39f/8146983/68a1ef88ed67/life-11-00407-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d39f/8146983/0a455185effe/life-11-00407-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d39f/8146983/48ea65f17db5/life-11-00407-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d39f/8146983/71ac77d76677/life-11-00407-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d39f/8146983/c334badec869/life-11-00407-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d39f/8146983/65869fa9827b/life-11-00407-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d39f/8146983/0f9f24b22326/life-11-00407-sch001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d39f/8146983/49d0cf803fa4/life-11-00407-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d39f/8146983/0abc19bb730a/life-11-00407-sch002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d39f/8146983/68a1ef88ed67/life-11-00407-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d39f/8146983/0a455185effe/life-11-00407-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d39f/8146983/48ea65f17db5/life-11-00407-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d39f/8146983/71ac77d76677/life-11-00407-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d39f/8146983/c334badec869/life-11-00407-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d39f/8146983/65869fa9827b/life-11-00407-g007.jpg

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