Institute of Chemistry and Chemical Technology SB RAS, Federal Research Center "Krasnoyarsk Science Center SB RAS", Krasnoyarsk, Russian Federation.
Université de Lyon, Université Claude Bernard Lyon 1, CNRS, IRCELYON, Institut de Recherches sur la Catalyse et l'Environnement de Lyon, Villeurbanne, France.
J Mol Model. 2021 May 5;27(6):152. doi: 10.1007/s00894-021-04781-6.
Time-dependent density functional theory (TD-DFT) and spectrophotometric methods were used for speciation analysis in systems disulfides (cystine, cystamine, homocystine, 3,3-dithiodipropionic acid) - [PdCl] or [PtCl]. We use the M06-2X and CAM-B3LYP density functionals with Def2-SVP basis set to reproduce the experimental UV-vis spectra; the polarized continuum solvation model (PCM) was fitted to take into account solvation effects of the medium (water). Used methods have shown the good agrees with the experiment - theoretical values of transition energies differ from real parameters within ±0.15 eV for functional CAM-B3LYP. Binuclear disulfide complexes of Pd(II) with cystine and cystamine have form S,N-coordination sites, instead of S,S-conformation. It was shown that Pd(II) thiolate complexes formed by cleavage of the disulfide bond exist as [PdClL] and [PdSL]. Pt(II)-disulfide systems have confirmed the presence of [PtCl(R-SS-R)] and [PtCl(S-R)] complex species. The DFT/CAM-B3LYP/Def2-SVP/SMD level can be recommended for theoretical estimations of absorption spectra of complexes of palladium or platinum and sulfur-containing ligands.
采用时间依赖密度泛函理论(TD-DFT)和分光光度法对二硫化物(胱氨酸、胱胺、同型半胱氨酸、3,3-二硫代二丙酸)-[PdCl]或[PtCl]体系中的形态分析。我们使用 M06-2X 和 CAM-B3LYP 密度泛函,并采用 Def2-SVP 基组来重现实验的紫外可见光谱;采用极化连续溶剂模型(PCM)拟合以考虑溶剂(水)的溶剂化效应。所使用的方法与实验吻合较好——理论跃迁能量与实验参数的差异在±0.15 eV 以内,对于 CAM-B3LYP 函数。二价钯(II)与胱氨酸和胱胺的双核二硫化物配合物形成 S,N-配位位点,而不是 S,S-构象。结果表明,通过二硫键断裂形成的 Pd(II)硫醇配合物以[PdClL]和[PdSL]形式存在。Pt(II)-二硫化物体系证实了[PtCl(R-SS-R)]和[PtCl(S-R)]配合物的存在。DFT/CAM-B3LYP/Def2-SVP/SMD 水平可用于理论估计钯或铂与含硫配体的配合物的吸收光谱。