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密度泛函理论框架下均配型钯(II)和铂(II)配合物中的非共价相互作用:几何结构、对称适配微扰理论的能量成分与非共价相互作用描述符之间的相关性

An account of noncovalent interactions in homoleptic palladium(II) and platinum(II) complexes within the DFT framework: A correlation between geometries, energy components of symmetry-adapted perturbation theory and NCI descriptors.

作者信息

Chakraborty Jishnunil

机构信息

Department of Chemistry, St. Paul's Cathedral Mission College, Kolkata-700 009, India.

出版信息

Heliyon. 2022 Nov 8;8(11):e11408. doi: 10.1016/j.heliyon.2022.e11408. eCollection 2022 Nov.

DOI:10.1016/j.heliyon.2022.e11408
PMID:36387540
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9647471/
Abstract

The present work addresses the underlying nature of weak noncovalent interactions (NCIs) in the self-assembled dimers of two square planar palladium(II) and platinum(II) complexes [Pd(Hida)] () and [Pt(Hida)] () (Hida = monoprotonated iminodiacetate) within the framework of density functional theory (DFT) in gas phase. Initial geometries of the dimers in different spatial orientations were extracted from the X-ray crystal structures, reported earlier, and optimized with three dispersion-corrected functionals that are frequently used to explore NCIs. The BP86-D3, M062X-D3 and B97X-D3 functionals have been used to test their performances over the present systems. The SARC-ZORA-TZVP and ZORA-def2-TZVP basis sets were applied for the metals and the remaining elements, respectively. The optimizations resulted in equilibrium geometries where the monomers are self-assembled through NCIs to form dimers in a cyclic fashion. This type of structural pattern is absent in the crystal structures of both and . Physical components of interaction energies were investigated by symmetry-adapted perturbation theory (SAPT). The UV-Vis absorption spectra of the dimers are described by time-dependent density functional theory (TD-DFT). Global reactivity parameters for the dimers have been computed within the framework of conceptual density functional theory (CDFT). Detailed investigations on NCIs were performed for all dimer geometries. Simulated IR and H NMR spectra, charge transfer, QTAIM, NCI-RGD, IGM, ETS-NOCV and ELF studies confirmed the presence of intermolecular hydrogen bonds (HBs) and weak van der Waals interactions. Energies of the hydrogen bonds and associated orbital interaction energies were computed by QTAIM and ETS-NOCV methods, respectively.

摘要

本工作在密度泛函理论(DFT)框架下,研究了气相中两种平面正方形钯(II)和铂(II)配合物[Pd(Hida)]()和[Pt(Hida)]()(Hida = 单质子化亚氨基二乙酸酯)自组装二聚体中弱非共价相互作用(NCI)的内在本质。二聚体在不同空间取向下的初始几何结构是从先前报道的X射线晶体结构中提取的,并用三种常用于探索NCI的色散校正泛函进行了优化。BP86-D3、M062X-D3和B97X-D3泛函已用于测试它们在当前体系中的性能。分别对金属和其余元素应用了SARC-ZORA-TZVP和ZORA-def2-TZVP基组。优化得到了平衡几何结构,其中单体通过NCI自组装形成环状二聚体。和的晶体结构中均不存在这种类型的结构模式。通过对称适配微扰理论(SAPT)研究了相互作用能的物理成分。二聚体的紫外-可见吸收光谱用时变密度泛函理论(TD-DFT)进行描述。在概念密度泛函理论(CDFT)框架内计算了二聚体的全局反应性参数。对所有二聚体几何结构进行了NCI的详细研究。模拟的红外和氢核磁共振光谱、电荷转移、QTAIM、NCI-RGD、IGM、ETS-NOCV和ELF研究证实了分子间氢键(HBs)和弱范德华相互作用的存在。分别通过QTAIM和ETS-NOCV方法计算了氢键的能量和相关的轨道相互作用能。

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