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三种稻象甲寄生蜂中发现的多样化 RNA 病毒。

Diverse RNA Viruses Discovered in Three Parasitoid Wasps of the Rice Weevil .

机构信息

State Key Laboratory of Rice Biology, Ministry of Agriculture and Rural Affairs Key Laboratory of Molecular Biology of Crop Pathogens and Insects, Institute of Insect Sciences, Zhejiang University, Hangzhou, China.

Division of Plant Sciences, College of Agriculture, Food and Natural Resources, University of Missouri, Columbia, Missouri, USA.

出版信息

mSphere. 2021 May 5;6(3):e00331-21. doi: 10.1128/mSphere.00331-21.

Abstract

In this study, many virus-like fragments were obtained from transcriptomes of three wasp species, including (8), (3), and (18), which can parasitize and control rice weevil , a serious insect pest of farm-stored grains. By further bioinformatic analysis and sequencing, we identified six novel RNA viruses with complete genomes and named them WWPSRV-1, WWPSRV-2, AcPSRV-1, AcNSRV-1, AcNSRV-2, and LdNSRV-1. PCR-based detection revealed that WWPSRV-1 and WWPSRV-2 had the possibility of interspecies virus transmission, especially WWPSRV-2, which was also present in the rice weevil adults. Phylogenetically, three out of these six viruses appeared to be members of order : WWPSRV-1 belonged to unassigned virus families of this order, whereas WWPSRV-2 and AcPSRV-1 belonged to families and , respectively. The conserved picornavirus-typical domains helicase, protease, and RNA-dependent RNA polymerase could be found in the nonstructural protein encoded by the three viruses, whose genomes consisted of the different numbers of open reading frames (ORFs). The other three RNA viruses could be classified to order : AcNSRV-1 and AcNSRV-2 belonged to family , whereas LdNSRV-1 belonged to a big family The genomes of the three viruses contained at least five ORFs, encoding deduced proteins in the following order: 3'-N-P-M-G-L-5'. All the ORFs were separated by conserved intergenic sequences which likely regulated the transcription termination and initiation. Our findings enhance the understanding of RNA viruses in weevil wasps and set the foundation for the future study of the association among weevils, weevil wasps, and RNA viruses. The enormous diversity of RNA viruses in insects is continuously validated. Parasitoid wasps, as biocontrol insects which are widely used against insect pests in agroecosystems, may also carry many "good" RNA viruses. Some RNA viruses in parasitoid wasps have been reported to affect the host wasps or the wasps' host. Here, six novel RNA viruses with complete genomes were identified in three parasitoid wasps of the rice weevil. One of these viruses was also detected in the rice weevil adults. Phylogenetically, WWPSRV-1 was the first unambiguous detection of Nora-like virus in insect parasitoids. WWPSRV-2 and AcPSRV-1 belong to families and , some viruses of which can result in lethal infections in silkworms and honeybees. The other three RNA viruses belong to order , which comprises many well-known insect-associated viruses.

摘要

在这项研究中,从三种黄蜂物种(包括 (8)、(3)和 (18))的转录组中获得了许多病毒样片段,这些黄蜂可以寄生和控制储粮害虫米象。通过进一步的生物信息学分析和测序,我们鉴定了六个具有完整基因组的新型 RNA 病毒,并将它们命名为 WWPSRV-1、WWPSRV-2、AcPSRV-1、AcNSRV-1、AcNSRV-2 和 LdNSRV-1。基于 PCR 的检测表明,WWPSRV-1 和 WWPSRV-2 有可能在种间传播病毒,尤其是 WWPSRV-2,它也存在于米象成虫中。系统发育分析表明,这六种病毒中有三种似乎属于目:WWPSRV-1 属于该目的未分类病毒科,而 WWPSRV-2 和 AcPSRV-1 分别属于科和。在由这三种病毒编码的非结构蛋白中可以发现小核糖核酸病毒典型结构域的解旋酶、蛋白酶和 RNA 依赖性 RNA 聚合酶,其基因组由不同数量的开放阅读框(ORF)组成。另外三种 RNA 病毒可归类于目:AcNSRV-1 和 AcNSRV-2 属于科,而 LdNSRV-1 属于一个大家族。这三种病毒的基因组至少包含五个 ORF,编码以下顺序的推定蛋白:3'-N-P-M-G-L-5'。所有 ORF 都被保守的基因间序列隔开,这些序列可能调节转录的终止和起始。我们的发现增进了对象鼻虫黄蜂中 RNA 病毒的理解,并为未来研究象鼻虫、象鼻虫黄蜂和 RNA 病毒之间的关系奠定了基础。昆虫中 RNA 病毒的巨大多样性不断得到验证。作为广泛用于农业生态系统中防治害虫的生物防治昆虫的寄生性黄蜂,也可能携带许多“有益”的 RNA 病毒。已经有报道称寄生性黄蜂中的一些 RNA 病毒会影响宿主黄蜂或黄蜂的宿主。在这里,在三种米象的寄生性黄蜂中鉴定了六种具有完整基因组的新型 RNA 病毒。其中一种病毒也在米象成虫中检测到。系统发育分析表明,WWPSRV-1 是昆虫寄生性黄蜂中首次明确检测到 Nora-like 病毒。WWPSRV-2 和 AcPSRV-1 属于科和,其中一些病毒可导致家蚕和蜜蜂的致命感染。另外三种 RNA 病毒属于目,其中包含许多著名的与昆虫相关的病毒。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bc06/8103988/50cf891e3eea/mSphere.00331-21-f001.jpg

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