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用于中子散射的氘化

Deuteration Aiming for Neutron Scattering.

作者信息

Okuda Aya, Inoue Rintaro, Morishima Ken, Saio Tomohide, Yunoki Yasuhiro, Yagi-Utsumi Maho, Yagi Hirokazu, Shimizu Masahiro, Sato Nobuhiro, Urade Reiko, Kato Koichi, Sugiyama Masaaki

机构信息

Institute for Integrated Radiation and Nuclear Science, Kyoto University, Sennan-gun, Osaka 590-0494 Japan.

Institute of Advanced Medical Sciences, Tokushima University, Tokushima 770-8503, Japan.

出版信息

Biophys Physicobiol. 2021 Feb 6;18:16-27. doi: 10.2142/biophysico.bppb-v18.003. eCollection 2021.

DOI:10.2142/biophysico.bppb-v18.003
PMID:33954079
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8049778/
Abstract

The distinguished feature of neutron as a scattering probe is an isotope effect, especially the large difference in neutron scattering length between hydrogen and deuterium. The difference renders the different visibility between hydrogenated and deuterated proteins. Therefore, the combination of deuterated protein and neutron scattering enables the selective visualization of a target domain in the complex or a target protein in the multi-component system. Despite of this fascinating character, there exist several problems for the general use of this method: difficulty and high cost for protein deuteration, and control and determination of deuteration ratio of the sample. To resolve them, the protocol of protein deuteration techniques is presented in this report. It is strongly expected that this protocol will offer more opportunity for conducting the neutron scattering studies with deuterated proteins.

摘要

中子作为散射探针的显著特点是同位素效应,尤其是氢和氘之间中子散射长度的巨大差异。这种差异使得氢化和氘化蛋白质具有不同的可见性。因此,氘化蛋白质与中子散射相结合,能够在复合物中选择性地可视化目标结构域,或在多组分系统中选择性地可视化目标蛋白质。尽管具有这种引人入胜的特性,但该方法的普遍应用仍存在几个问题:蛋白质氘化的难度和高成本,以及样品氘化率的控制和测定。为了解决这些问题,本报告提出了蛋白质氘化技术的方案。强烈期望该方案将为使用氘化蛋白质进行中子散射研究提供更多机会。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/efc6/8049778/92dbddd013c0/18_016-g010.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/efc6/8049778/74d4b34b8ed7/18_016-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/efc6/8049778/8a040e43c1d8/18_016-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/efc6/8049778/8f4ef2637398/18_016-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/efc6/8049778/efebf9b82917/18_016-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/efc6/8049778/470987415e06/18_016-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/efc6/8049778/9a58ba888691/18_016-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/efc6/8049778/f2d3780e1f2f/18_016-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/efc6/8049778/000b1c535767/18_016-g008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/efc6/8049778/6851f768d1f8/18_016-g009.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/efc6/8049778/92dbddd013c0/18_016-g010.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/efc6/8049778/74d4b34b8ed7/18_016-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/efc6/8049778/8a040e43c1d8/18_016-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/efc6/8049778/8f4ef2637398/18_016-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/efc6/8049778/efebf9b82917/18_016-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/efc6/8049778/470987415e06/18_016-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/efc6/8049778/9a58ba888691/18_016-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/efc6/8049778/f2d3780e1f2f/18_016-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/efc6/8049778/000b1c535767/18_016-g008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/efc6/8049778/6851f768d1f8/18_016-g009.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/efc6/8049778/92dbddd013c0/18_016-g010.jpg

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3
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Mass Spectrom Rev. 2018 Nov;37(6):811-853. doi: 10.1002/mas.21565. Epub 2018 Mar 30.
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Segmental, Domain-Selective Perdeuteration and Small-Angle Neutron Scattering for Structural Analysis of Multi-Domain Proteins.分段、域选择性氘代和小角中子散射在多结构域蛋白结构分析中的应用。
Angew Chem Int Ed Engl. 2017 Aug 1;56(32):9322-9325. doi: 10.1002/anie.201702904. Epub 2017 Jul 5.
5
Time-resolved neutron scattering provides new insight into protein substrate processing by a AAA+ unfoldase.时间分辨中子散射为 AAA+ 解旋酶对蛋白质底物的加工提供了新的见解。
Sci Rep. 2017 Jan 19;7:40948. doi: 10.1038/srep40948.
6
Structural characterization of the circadian clock protein complex composed of KaiB and KaiC by inverse contrast-matching small-angle neutron scattering.通过逆对比匹配小角中子散射对由 KaiB 和 KaiC 组成的生物钟蛋白复合物的结构特征进行分析。
Sci Rep. 2016 Oct 18;6:35567. doi: 10.1038/srep35567.
7
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