从枣椰树 rhizosphere 分离出的阿塔卡马假单胞菌菌株 SM1 和丰臣假单胞菌菌株 SM2 的全基因组序列
Complete Genome Sequences of Pseudomonas atacamensis Strain SM1 and Pseudomonas toyotomiensis Strain SM2, Isolated from the Date Palm Rhizosphere.
作者信息
Elmahi Yassine, Alshamsi Mohammed Saeed, Sudalaimuthuasari Naganeeswaran, Kundu Biduth, AlMaskari Raja S, Hazzouri Khaled M, Chandran Subha, Malik Shahana Sehar, Mundra Sunil, Amiri Khaled M A
机构信息
Department of Biology, College of Science, United Arab Emirates University, Al Ain, United Arab Emirates.
Khalifa Center for Genetic Engineering and Biotechnology, United Arab Emirates University, Al Ain, United Arab Emirates.
出版信息
Microbiol Resour Announc. 2021 May 6;10(18):e00253-21. doi: 10.1128/MRA.00253-21.
Abstract
Here, we announce the complete genome sequences of two phosphate-solubilizing rhizobacteria, strain SM1 (genome size, ∼5.9 Mb) and strain SM2 (genome size, ∼5.2 Mb), isolated from the rhizosphere of date palms growing in the oasis agroecosystem of the United Arab Emirates (UAE).
摘要
在此，我们公布了从阿拉伯联合酋长国（UAE）绿洲农业生态系统中生长的枣椰树根际分离出的两种解磷根际细菌菌株SM1（基因组大小约为5.9 Mb）和菌株SM2（基因组大小约为5.2 Mb）的完整基因组序列。
相似文献
1
Complete Genome Sequences of Pseudomonas atacamensis Strain SM1 and Pseudomonas toyotomiensis Strain SM2, Isolated from the Date Palm Rhizosphere.从枣椰树 rhizosphere 分离出的阿塔卡马假单胞菌菌株 SM1 和丰臣假单胞菌菌株 SM2 的全基因组序列
Microbiol Resour Announc. 2021 May 6;10(18):e00253-21. doi: 10.1128/MRA.00253-21.
2
Contrasting genome patterns of two pseudomonas strains isolated from the date palm rhizosphere to assess survival in a hot arid environment.对比从枣椰树根际分离的两株假单胞菌的基因组模式，以评估其在炎热干旱环境中的生存能力。
World J Microbiol Biotechnol. 2022 Aug 26;38(11):207. doi: 10.1007/s11274-022-03392-4.
3
Complete Genome Sequence of Phytobacter diazotrophicus Strain UAEU22, a Plant Growth-Promoting Bacterium Isolated from the Date Palm Rhizosphere.从枣椰树根系分离出的植物促生细菌——固氮嗜植菌UAEU22菌株的全基因组序列
Microbiol Resour Announc. 2020 Jun 18;9(25):e00499-20. doi: 10.1128/MRA.00499-20.
4
Genotypic and Phenotypic Characterization of EMP42 a PGPR Strain Obtained from the Rhizosphere of (Sweet Barrel).从（甜桶）根际获得的植物根际促生菌EMP42菌株的基因型和表型特征分析
Microorganisms. 2024 Jul 24;12(8):1512. doi: 10.3390/microorganisms12081512.
5
Complete Genome Sequence of the Plant Growth-Promoting Bacterium Pantoea agglomerans Strain UAEU18, Isolated from Date Palm Rhizosphere Soil in the United Arab Emirates.从阿联酋枣椰树根际土壤中分离出的植物促生细菌聚团泛菌菌株UAEU18的全基因组序列
Microbiol Resour Announc. 2020 Apr 23;9(17):e00174-20. doi: 10.1128/MRA.00174-20.
6
Pseudomonas atacamensis sp. nov., isolated from the rhizosphere of desert bloom plant in the region of Atacama, Chile.栖居于智利阿塔卡马地区沙漠开花植物根际的假单胞菌属新种。
Antonie Van Leeuwenhoek. 2020 Aug;113(8):1201-1211. doi: 10.1007/s10482-020-01427-0. Epub 2020 May 20.
7
High quality draft genome sequence of the type strain of Pseudomonas lutea OK2(T), a phosphate-solubilizing rhizospheric bacterium.溶磷根际细菌淡黄假单胞菌OK2(T)模式菌株的高质量基因组草图序列
Stand Genomic Sci. 2016 Aug 23;11(1):51. doi: 10.1186/s40793-016-0173-7. eCollection 2016.
8
Taxonomic description and draft genome of Pseudomonas sediminis sp. nov., isolated from the rhizospheric sediment of Phragmites karka.分类描述和假单胞菌 sediminis sp。 nov。 的基因组草案，从芦苇根际沉积物中分离。
J Microbiol. 2018 Jul;56(7):458-466. doi: 10.1007/s12275-018-7549-x. Epub 2018 Jun 14.
9
Properties of Probiotics Kocuria SM1 and Rhodococcus SM2 Isolated from Fish Guts.从鱼肠道中分离的益生菌Kocuria SM1 和 Rhodococcus SM2 的特性。
Probiotics Antimicrob Proteins. 2018 Sep;10(3):534-542. doi: 10.1007/s12602-017-9290-x.
10
Draft Genome Sequence of sp. Strain M7D1, Isolated from the Rhizosphere of Desert Bloom Plants.从沙漠开花植物根际分离的sp. 菌株M7D1的基因组序列草图
Microbiol Resour Announc. 2019 May 30;8(22):e00441-19. doi: 10.1128/MRA.00441-19.
引用本文的文献
1
Genotypic and Phenotypic Characterization of EMP42 a PGPR Strain Obtained from the Rhizosphere of (Sweet Barrel).从（甜桶）根际获得的植物根际促生菌EMP42菌株的基因型和表型特征分析
Microorganisms. 2024 Jul 24;12(8):1512. doi: 10.3390/microorganisms12081512.
2
Contrasting genome patterns of two pseudomonas strains isolated from the date palm rhizosphere to assess survival in a hot arid environment.对比从枣椰树根际分离的两株假单胞菌的基因组模式，以评估其在炎热干旱环境中的生存能力。
World J Microbiol Biotechnol. 2022 Aug 26;38(11):207. doi: 10.1007/s11274-022-03392-4.
3
Bioremediation potential of glyphosate-degrading microorganisms in eutrophicated Ecuadorian water bodies.厄瓜多尔富营养化水体中草甘膦降解微生物的生物修复潜力
Saudi J Biol Sci. 2022 Mar;29(3):1550-1558. doi: 10.1016/j.sjbs.2021.11.013. Epub 2021 Nov 12.
本文引用的文献
1
Canu: scalable and accurate long-read assembly via adaptive -mer weighting and repeat separation.Canu：通过自适应k-mer加权和重复序列分离实现可扩展且准确的长读长序列拼接
Genome Res. 2017 May;27(5):722-736. doi: 10.1101/gr.215087.116. Epub 2017 Mar 15.
2
NCBI prokaryotic genome annotation pipeline.美国国立生物技术信息中心原核生物基因组注释管道
Nucleic Acids Res. 2016 Aug 19;44(14):6614-24. doi: 10.1093/nar/gkw569. Epub 2016 Jun 24.
3
BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs.BUSCO：利用单拷贝同源基因评估基因组组装和注释的完整性。
Bioinformatics. 2015 Oct 1;31(19):3210-2. doi: 10.1093/bioinformatics/btv351. Epub 2015 Jun 9.
4
Trimmomatic: a flexible trimmer for Illumina sequence data.Trimmomatic：一款适用于 Illumina 测序数据的灵活修剪工具。
Bioinformatics. 2014 Aug 1;30(15):2114-20. doi: 10.1093/bioinformatics/btu170. Epub 2014 Apr 1.
5
SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing.SPAdes：一种新的基因组组装算法及其在单细胞测序中的应用
J Comput Biol. 2012 May;19(5):455-77. doi: 10.1089/cmb.2012.0021. Epub 2012 Apr 16.
Zotero 插件