内共生细菌“虱内利氏菌”的全基因组序列
Complete Genome Sequence of the Endosymbiotic Bacterium " Riesia pediculicola".
作者信息
Park Jongsun, Lee Si Hyeock, Kim Ju Hyeon
机构信息
InfoBoss, Inc., Gangnam-gu, Seoul, Republic of Korea
InfoBoss Research Center, Gangnam-gu, Seoul, Republic of Korea.
出版信息
Microbiol Resour Announc. 2021 May 6;10(18):e01181-20. doi: 10.1128/MRA.01181-20.
Abstract
Human head and body lice host the obligate endosymbiotic bacterium " Riesia pediculicola." In this announcement, we describe the complete genome sequence of a " Riesia pediculicola" strain isolated from the human head louse, subsp. The inter- and intraspecific variations of endosymbiont genomes were investigated, and this strain was found to display high-level variations in its genome.
摘要
人头虱和人体虱携带专性内共生细菌“人虱里氏菌”。在本报告中，我们描述了从人头虱中分离出的人虱里氏菌菌株亚种的完整基因组序列。我们研究了内共生菌基因组的种间和种内变异，发现该菌株在其基因组中表现出高水平变异。
相似文献
1
Complete Genome Sequence of the Endosymbiotic Bacterium " Riesia pediculicola".
Microbiol Resour Announc. 2021 May 6;10(18):e01181-20. doi: 10.1128/MRA.01181-20.
2
Phylogenetic relationship between the endosymbiont "Candidatus Riesia pediculicola" and its human louse host.
Parasit Vectors. 2022 Mar 5;15(1):73. doi: 10.1186/s13071-022-05203-z.
3
Genome sequences of the human body louse and its primary endosymbiont provide insights into the permanent parasitic lifestyle.
Proc Natl Acad Sci U S A. 2010 Jul 6;107(27):12168-73. doi: 10.1073/pnas.1003379107. Epub 2010 Jun 21.
4
Evolutionary relationships of "Candidatus Riesia spp.," endosymbiotic enterobacteriaceae living within hematophagous primate lice.
Appl Environ Microbiol. 2007 Mar;73(5):1659-64. doi: 10.1128/AEM.01877-06. Epub 2007 Jan 12.
5
Microbiome Differences Between Human Head and Body Lice Ecotypes Revealed by 16S RRNA Gene Amplicon Sequencing.
J Parasitol. 2020 Feb;106(1):14-24.
6
Genome sequence of Candidatus Riesia pediculischaeffi, endosymbiont of chimpanzee lice, and genomic comparison of recently acquired endosymbionts from human and chimpanzee lice.
G3 (Bethesda). 2014 Sep 11;4(11):2189-95. doi: 10.1534/g3.114.012567.
7
Utilization of the human louse genome to study insecticide resistance and innate immune response.
Pestic Biochem Physiol. 2015 May;120:125-32. doi: 10.1016/j.pestbp.2014.11.008. Epub 2014 Nov 20.
8
Decoding in Candidatus Riesia pediculicola, close to a minimal tRNA modification set?
Trends Cell Mol Biol. 2012;7:11-34.
9
Sequencing of a new target genome: the Pediculus humanus humanus (Phthiraptera: Pediculidae) genome project.
J Med Entomol. 2006 Nov;43(6):1103-11. doi: 10.1603/0022-2585(2006)43[1103:soantg]2.0.co;2.
10
The mitochondrial genome of the chimpanzee louse, Pediculus schaeffi: insights into the process of mitochondrial genome fragmentation in the blood-sucking lice of great apes.
BMC Genomics. 2015 Sep 3;16(1):661. doi: 10.1186/s12864-015-1843-3.
引用本文的文献
1
Comprehensive Analysis of the Fourteen Complete Genome Sequences of Isolated from Species.
J Microbiol Biotechnol. 2024 Dec 19;35:e2409004. doi: 10.4014/jmb.2409.09004.
2
The investigation of intraspecific characteristics and comparative analyses of the complete mitochondrial genome of (Linnaeus, 1758) (Coleoptera: Ptinidae) assembled from public NGS raw reads of the black truffle, .
Sci Prog. 2022 Jan-Mar;105(1):368504211072355. doi: 10.1177/00368504211072355.
3
A Comparative Analyses of the Complete Mitochondrial Genomes of Fungal Endosymbionts in , White-Backed Planthoppers.
Int J Genomics. 2021 Jun 8;2021:6652508. doi: 10.1155/2021/6652508. eCollection 2021.
4
Complete Genome Sequence of Lentilactobacillus parabuchneri Strain KEM.
Microbiol Resour Announc. 2021 May 20;10(20):e01208-20. doi: 10.1128/MRA.01208-20.
本文引用的文献
1
The complete mitochondrial genome of Glover, 1877 (Hemiptera: Aphididae) isolated from in Korea.
Mitochondrial DNA B Resour. 2020 Jul 20;5(3):2878-2880. doi: 10.1080/23802359.2020.1792366.
2
The complete mitochondrial genome of Glover, 1877 (Hemiptera: Aphididae) collected in Korean peninsula.
Mitochondrial DNA B Resour. 2019 Sep 13;4(2):3007-3009. doi: 10.1080/23802359.2019.1666051.
3
NCBI prokaryotic genome annotation pipeline.
Nucleic Acids Res. 2016 Aug 19;44(14):6614-24. doi: 10.1093/nar/gkw569. Epub 2016 Jun 24.
4
Trimmomatic: a flexible trimmer for Illumina sequence data.
Bioinformatics. 2014 Aug 1;30(15):2114-20. doi: 10.1093/bioinformatics/btu170. Epub 2014 Apr 1.
5
MAFFT multiple sequence alignment software version 7: improvements in performance and usability.
Mol Biol Evol. 2013 Apr;30(4):772-80. doi: 10.1093/molbev/mst010. Epub 2013 Jan 16.
6
Optimizing de novo transcriptome assembly from short-read RNA-Seq data: a comparative study.
BMC Bioinformatics. 2011 Dec 14;12 Suppl 14(Suppl 14):S2. doi: 10.1186/1471-2105-12-S14-S2.
7
Genome sequences of the human body louse and its primary endosymbiont provide insights into the permanent parasitic lifestyle.
Proc Natl Acad Sci U S A. 2010 Jul 6;107(27):12168-73. doi: 10.1073/pnas.1003379107. Epub 2010 Jun 21.
8
The Sequence Alignment/Map format and SAMtools.
Bioinformatics. 2009 Aug 15;25(16):2078-9. doi: 10.1093/bioinformatics/btp352. Epub 2009 Jun 8.
9
Velvet: algorithms for de novo short read assembly using de Bruijn graphs.
Genome Res. 2008 May;18(5):821-9. doi: 10.1101/gr.074492.107. Epub 2008 Mar 18.
10
[Experimental studies on the significance of symbiosis in the clothes louse Pediculus vestimenti Burm].
Z Parasitenkd. 1955;17(1):1-40. doi: 10.1007/BF00260226.
Zotero 插件