Choi Nak Jung, Xi Hong, Park Jongsun
Crop Foundation Division, National Institute of Crop Science, RDA, Wanju, Republic of Korea.
InfoBoss Inc., 301 room, 670, Seolleung-ro, Gangnam-gu, Seoul, Republic of Korea.
Int J Genomics. 2021 Jun 8;2021:6652508. doi: 10.1155/2021/6652508. eCollection 2021.
Horvath, commonly known as the white-backed planthoppers (WBPH), is an important pest in East Asian rice fields. Fungal endosymbiosis is widespread among planthoppers in the infraorder Fulgoromorpha and suborder Auchenorrhyncha. We successfully obtained complete mitogenome of five WBPH fungal endosymbionts, belonging to the Ophiocordycipitaceae family, from next-generation sequencing (NGS) reads obtained from samples. These five mitogenomes range in length from 55,390 bp to 55,406 bp, which is shorter than the mitogenome of the fungal endosymbiont found in , black planthoppers. Twenty-eight protein-coding genes (PCGs), 12 tRNAs, and 2 rRNAs were found in the mitogenomes. Two single-nucleotide polymorphisms, two insertions, and three deletions were identified among the five mitogenomes, which were fewer in number than those of four species of Ophiocordycipitaceae, , , , and . Noticeably short lengths (up to 18 bp) of simple sequence repeats were identified in the five WBPH fungal endosymbiont mitogenomes. Phylogenetic analysis based on conserved PCGs across 25 Ophiocordycipitaceae mitogenomes revealed that the five mitogenomes were clustered with that of , forming an independent clade. In addition to providing the full mitogenome sequences, obtaining complete mitogenomes of WBPH endosymbionts can provide insights into their phylogenetic positions without needing to isolate the mtDNA from the host. This advantage is of value to future studies involving fungal endosymbiont mitogenomes.
褐飞虱,通常被称为白背飞虱(WBPH),是东亚稻田中的一种重要害虫。真菌内共生现象在蜡蝉亚目和同翅亚目飞虱中广泛存在。我们通过对样本的二代测序(NGS)读取,成功获得了属于蛇孢虫草科的五种白背飞虱真菌内共生体的完整线粒体基因组。这五个线粒体基因组的长度在55,390 bp至55,406 bp之间,比在黑尾叶蝉中发现的真菌内共生体的线粒体基因组短。在线粒体基因组中发现了28个蛋白质编码基因(PCG)、12个tRNA和2个rRNA。在这五个线粒体基因组中鉴定出两个单核苷酸多态性、两个插入和三个缺失,其数量少于蛇孢虫草科的四个物种(分别为[具体物种1]、[具体物种2]、[具体物种3]和[具体物种4])。在五个白背飞虱真菌内共生体的线粒体基因组中发现了明显短的简单序列重复片段(长度可达18 bp)。基于25个蛇孢虫草科线粒体基因组中保守的PCG进行的系统发育分析表明,这五个线粒体基因组与[具体物种]的线粒体基因组聚类,形成一个独立的分支。除了提供完整的线粒体基因组序列外,获得白背飞虱内共生体的完整线粒体基因组可以在无需从宿主中分离线粒体DNA的情况下深入了解它们的系统发育位置。这一优势对未来涉及真菌内共生体线粒体基因组的研究具有重要价值。